miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 33690 0.7 0.825676
Target:  5'- gGCUaaCGCGCAUcgcUCCGa-GCCGCGUCu -3'
miRNA:   3'- -CGAa-GCGCGUAa--AGGUggCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 56317 0.7 0.834136
Target:  5'- cGCggcCGCGCug--CCGCCGUCGCG-Ca -3'
miRNA:   3'- -CGaa-GCGCGuaaaGGUGGCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 80576 0.7 0.842408
Target:  5'- cCUUCGCGC---UCCgguGCCGCC-UGUCg -3'
miRNA:   3'- cGAAGCGCGuaaAGG---UGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 91205 0.7 0.850486
Target:  5'- aGgUUCGCGCAcUgggcuaucUCUGCCGCCGCcUCg -3'
miRNA:   3'- -CgAAGCGCGUaA--------AGGUGGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 74542 0.69 0.858362
Target:  5'- aGCUUCGU-CAggUUCACCGCCAacagaugguUGUCa -3'
miRNA:   3'- -CGAAGCGcGUaaAGGUGGCGGU---------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 105347 0.66 0.960833
Target:  5'- cGCcgCGCGCGccagcaucUUcgCCGCCGCCGCc-- -3'
miRNA:   3'- -CGaaGCGCGU--------AAa-GGUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 137179 0.66 0.960833
Target:  5'- ---aCGCGaUcgUUCCGCUGCuCACGUa -3'
miRNA:   3'- cgaaGCGC-GuaAAGGUGGCG-GUGCAg -5'
24385 5' -53.9 NC_005264.1 + 75689 0.66 0.957157
Target:  5'- cGCggCGCGCAUgcugUUCagUACCGCgACGaUCu -3'
miRNA:   3'- -CGaaGCGCGUA----AAG--GUGGCGgUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 25646 0.66 0.957157
Target:  5'- cGCUcCGCGU-UUUCCucaAUCGgCACGUCu -3'
miRNA:   3'- -CGAaGCGCGuAAAGG---UGGCgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 66444 0.66 0.95601
Target:  5'- -aUUCGgGCGcUUCCgauggggagauggcACCGCCGCGg- -3'
miRNA:   3'- cgAAGCgCGUaAAGG--------------UGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 98064 0.66 0.953252
Target:  5'- cGCUgCGCGCAgaucgUUUCGCgGCCAaaUCu -3'
miRNA:   3'- -CGAaGCGCGUa----AAGGUGgCGGUgcAG- -5'
24385 5' -53.9 NC_005264.1 + 126300 0.66 0.960833
Target:  5'- cGCUUucgggCGCGCGgccgauggcUCCugCGCCcgccuCGUCg -3'
miRNA:   3'- -CGAA-----GCGCGUaa-------AGGugGCGGu----GCAG- -5'
24385 5' -53.9 NC_005264.1 + 32985 0.66 0.964285
Target:  5'- gGC-UCGCGCAUaucgCCAUCggGCgCugGUCg -3'
miRNA:   3'- -CGaAGCGCGUAaa--GGUGG--CG-GugCAG- -5'
24385 5' -53.9 NC_005264.1 + 39207 0.66 0.964285
Target:  5'- ---aCGCGCcua--CGCCGCCGCGg- -3'
miRNA:   3'- cgaaGCGCGuaaagGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 54441 0.66 0.967205
Target:  5'- uGCUg-GCGCGggggaugcCCACCGCCGagcugguaagggcCGUCg -3'
miRNA:   3'- -CGAagCGCGUaaa-----GGUGGCGGU-------------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 114754 0.66 0.967518
Target:  5'- aGCgcaGCGCGUUcuugcCCugCGCCGC-UCg -3'
miRNA:   3'- -CGaagCGCGUAAa----GGugGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 38159 0.66 0.970538
Target:  5'- aGCaugCGUGCGa--CUACCGCCGCGc- -3'
miRNA:   3'- -CGaa-GCGCGUaaaGGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 95314 0.66 0.970538
Target:  5'- gGCa--GCGCAUggagauugCCGCCGCCggGCGcCg -3'
miRNA:   3'- -CGaagCGCGUAaa------GGUGGCGG--UGCaG- -5'
24385 5' -53.9 NC_005264.1 + 147617 0.66 0.970538
Target:  5'- aCUUagaGCGCAgg---AUCGCCGCGUCa -3'
miRNA:   3'- cGAAg--CGCGUaaaggUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 120444 1.13 0.002812
Target:  5'- aGCUUCGCGCAUUUCCACCGCCACGUCg -3'
miRNA:   3'- -CGAAGCGCGUAAAGGUGGCGGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.