Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 5' | -53.9 | NC_005264.1 | + | 144791 | 0.69 | 0.887725 |
Target: 5'- gGC-UCGCGgcg--CCGCCGCUucGCGUCg -3' miRNA: 3'- -CGaAGCGCguaaaGGUGGCGG--UGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 68429 | 0.69 | 0.887725 |
Target: 5'- aGCgaUCGCGCAg-UCCG-CGCCGCGgUCu -3' miRNA: 3'- -CGa-AGCGCGUaaAGGUgGCGGUGC-AG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 13416 | 0.67 | 0.944741 |
Target: 5'- cGCaccggCGCGCGa--CCGCCGCCGCc-- -3' miRNA: 3'- -CGaa---GCGCGUaaaGGUGGCGGUGcag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 83225 | 0.67 | 0.944741 |
Target: 5'- gGCcgUUGCGCGUgggcgUCUagGCCGCCGCu-- -3' miRNA: 3'- -CGa-AGCGCGUAa----AGG--UGGCGGUGcag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 147617 | 0.66 | 0.970538 |
Target: 5'- aCUUagaGCGCAgg---AUCGCCGCGUCa -3' miRNA: 3'- cGAAg--CGCGUaaaggUGGCGGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 95314 | 0.66 | 0.970538 |
Target: 5'- gGCa--GCGCAUggagauugCCGCCGCCggGCGcCg -3' miRNA: 3'- -CGaagCGCGUAaa------GGUGGCGG--UGCaG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 38159 | 0.66 | 0.970538 |
Target: 5'- aGCaugCGUGCGa--CUACCGCCGCGc- -3' miRNA: 3'- -CGaa-GCGCGUaaaGGUGGCGGUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 114754 | 0.66 | 0.967518 |
Target: 5'- aGCgcaGCGCGUUcuugcCCugCGCCGC-UCg -3' miRNA: 3'- -CGaagCGCGUAAa----GGugGCGGUGcAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 54441 | 0.66 | 0.967205 |
Target: 5'- uGCUg-GCGCGggggaugcCCACCGCCGagcugguaagggcCGUCg -3' miRNA: 3'- -CGAagCGCGUaaa-----GGUGGCGGU-------------GCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 39207 | 0.66 | 0.964285 |
Target: 5'- ---aCGCGCcua--CGCCGCCGCGg- -3' miRNA: 3'- cgaaGCGCGuaaagGUGGCGGUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 32985 | 0.66 | 0.964285 |
Target: 5'- gGC-UCGCGCAUaucgCCAUCggGCgCugGUCg -3' miRNA: 3'- -CGaAGCGCGUAaa--GGUGG--CG-GugCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 126300 | 0.66 | 0.960833 |
Target: 5'- cGCUUucgggCGCGCGgccgauggcUCCugCGCCcgccuCGUCg -3' miRNA: 3'- -CGAA-----GCGCGUaa-------AGGugGCGGu----GCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 105347 | 0.66 | 0.960833 |
Target: 5'- cGCcgCGCGCGccagcaucUUcgCCGCCGCCGCc-- -3' miRNA: 3'- -CGaaGCGCGU--------AAa-GGUGGCGGUGcag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 137179 | 0.66 | 0.960833 |
Target: 5'- ---aCGCGaUcgUUCCGCUGCuCACGUa -3' miRNA: 3'- cgaaGCGC-GuaAAGGUGGCG-GUGCAg -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 75689 | 0.66 | 0.957157 |
Target: 5'- cGCggCGCGCAUgcugUUCagUACCGCgACGaUCu -3' miRNA: 3'- -CGaaGCGCGUA----AAG--GUGGCGgUGC-AG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 25646 | 0.66 | 0.957157 |
Target: 5'- cGCUcCGCGU-UUUCCucaAUCGgCACGUCu -3' miRNA: 3'- -CGAaGCGCGuAAAGG---UGGCgGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 66444 | 0.66 | 0.95601 |
Target: 5'- -aUUCGgGCGcUUCCgauggggagauggcACCGCCGCGg- -3' miRNA: 3'- cgAAGCgCGUaAAGG--------------UGGCGGUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 98064 | 0.66 | 0.953252 |
Target: 5'- cGCUgCGCGCAgaucgUUUCGCgGCCAaaUCu -3' miRNA: 3'- -CGAaGCGCGUa----AAGGUGgCGGUgcAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 139990 | 0.67 | 0.949115 |
Target: 5'- aGgUUCGCGCGg--CC-UCGCC-CGUCc -3' miRNA: 3'- -CgAAGCGCGUaaaGGuGGCGGuGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 25002 | 0.67 | 0.949115 |
Target: 5'- uCUUgGCGC-UUUCCACCaG-CACGUUa -3' miRNA: 3'- cGAAgCGCGuAAAGGUGG-CgGUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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