miRNA display CGI


Results 101 - 120 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 39207 0.66 0.964285
Target:  5'- ---aCGCGCcua--CGCCGCCGCGg- -3'
miRNA:   3'- cgaaGCGCGuaaagGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 54441 0.66 0.967205
Target:  5'- uGCUg-GCGCGggggaugcCCACCGCCGagcugguaagggcCGUCg -3'
miRNA:   3'- -CGAagCGCGUaaa-----GGUGGCGGU-------------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 114754 0.66 0.967518
Target:  5'- aGCgcaGCGCGUUcuugcCCugCGCCGC-UCg -3'
miRNA:   3'- -CGaagCGCGUAAa----GGugGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 38159 0.66 0.970538
Target:  5'- aGCaugCGUGCGa--CUACCGCCGCGc- -3'
miRNA:   3'- -CGaa-GCGCGUaaaGGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 95314 0.66 0.970538
Target:  5'- gGCa--GCGCAUggagauugCCGCCGCCggGCGcCg -3'
miRNA:   3'- -CGaagCGCGUAaa------GGUGGCGG--UGCaG- -5'
24385 5' -53.9 NC_005264.1 + 147617 0.66 0.970538
Target:  5'- aCUUagaGCGCAgg---AUCGCCGCGUCa -3'
miRNA:   3'- cGAAg--CGCGUaaaggUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 66444 0.66 0.95601
Target:  5'- -aUUCGgGCGcUUCCgauggggagauggcACCGCCGCGg- -3'
miRNA:   3'- cgAAGCgCGUaAAGG--------------UGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 98064 0.66 0.953252
Target:  5'- cGCUgCGCGCAgaucgUUUCGCgGCCAaaUCu -3'
miRNA:   3'- -CGAaGCGCGUa----AAGGUGgCGGUgcAG- -5'
24385 5' -53.9 NC_005264.1 + 82893 0.68 0.919252
Target:  5'- uGCUUCGCccuaacuccCAUUugagaguggagUCCGCCGCagACGUCg -3'
miRNA:   3'- -CGAAGCGc--------GUAA-----------AGGUGGCGg-UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 37783 0.68 0.924836
Target:  5'- cCUUCGCGCcguugGUUuuccccggagccUCC-CCGCC-CGUCg -3'
miRNA:   3'- cGAAGCGCG-----UAA------------AGGuGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 57777 0.68 0.924836
Target:  5'- gGCUUCGCGUcgUcuagcUCC-UCGCgauuCACGUCa -3'
miRNA:   3'- -CGAAGCGCGuaA-----AGGuGGCG----GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 149498 0.67 0.930176
Target:  5'- cGCUcgauUCGCGCcgUUCCcuucgGCUuaGCCagGCGUCg -3'
miRNA:   3'- -CGA----AGCGCGuaAAGG-----UGG--CGG--UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 113961 0.67 0.935273
Target:  5'- aUUUCGUGU---UCCAcCCGgCGCGUCa -3'
miRNA:   3'- cGAAGCGCGuaaAGGU-GGCgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 153941 0.67 0.935273
Target:  5'- ---aCGCGCGUcUCCAgCGaCACGUUg -3'
miRNA:   3'- cgaaGCGCGUAaAGGUgGCgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 38052 0.67 0.943382
Target:  5'- --gUCGCGUGggucucccagcuuuUUUCUugCGCgGCGUCa -3'
miRNA:   3'- cgaAGCGCGU--------------AAAGGugGCGgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 101604 0.67 0.944741
Target:  5'- aGCUggaGCGCg---CCAUCGCCAaCGUg -3'
miRNA:   3'- -CGAag-CGCGuaaaGGUGGCGGU-GCAg -5'
24385 5' -53.9 NC_005264.1 + 13416 0.67 0.944741
Target:  5'- cGCaccggCGCGCGa--CCGCCGCCGCc-- -3'
miRNA:   3'- -CGaa---GCGCGUaaaGGUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 83225 0.67 0.944741
Target:  5'- gGCcgUUGCGCGUgggcgUCUagGCCGCCGCu-- -3'
miRNA:   3'- -CGa-AGCGCGUAa----AGG--UGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 25002 0.67 0.949115
Target:  5'- uCUUgGCGC-UUUCCACCaG-CACGUUa -3'
miRNA:   3'- cGAAgCGCGuAAAGGUGG-CgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 139990 0.67 0.949115
Target:  5'- aGgUUCGCGCGg--CC-UCGCC-CGUCc -3'
miRNA:   3'- -CgAAGCGCGUaaaGGuGGCGGuGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.