miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 113961 0.67 0.935273
Target:  5'- aUUUCGUGU---UCCAcCCGgCGCGUCa -3'
miRNA:   3'- cGAAGCGCGuaaAGGU-GGCgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 101604 0.67 0.944741
Target:  5'- aGCUggaGCGCg---CCAUCGCCAaCGUg -3'
miRNA:   3'- -CGAag-CGCGuaaaGGUGGCGGU-GCAg -5'
24385 5' -53.9 NC_005264.1 + 137179 0.66 0.960833
Target:  5'- ---aCGCGaUcgUUCCGCUGCuCACGUa -3'
miRNA:   3'- cgaaGCGC-GuaAAGGUGGCG-GUGCAg -5'
24385 5' -53.9 NC_005264.1 + 38159 0.66 0.970538
Target:  5'- aGCaugCGUGCGa--CUACCGCCGCGc- -3'
miRNA:   3'- -CGaa-GCGCGUaaaGGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 144791 0.69 0.887725
Target:  5'- gGC-UCGCGgcg--CCGCCGCUucGCGUCg -3'
miRNA:   3'- -CGaAGCGCguaaaGGUGGCGG--UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 125043 0.68 0.919252
Target:  5'- gGCggCGCGCcucuucUCCGCCGCuCGCcUCg -3'
miRNA:   3'- -CGaaGCGCGuaa---AGGUGGCG-GUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 83225 0.67 0.944741
Target:  5'- gGCcgUUGCGCGUgggcgUCUagGCCGCCGCu-- -3'
miRNA:   3'- -CGa-AGCGCGUAa----AGG--UGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 95314 0.66 0.970538
Target:  5'- gGCa--GCGCAUggagauugCCGCCGCCggGCGcCg -3'
miRNA:   3'- -CGaagCGCGUAaa------GGUGGCGG--UGCaG- -5'
24385 5' -53.9 NC_005264.1 + 82893 0.68 0.919252
Target:  5'- uGCUUCGCccuaacuccCAUUugagaguggagUCCGCCGCagACGUCg -3'
miRNA:   3'- -CGAAGCGc--------GUAA-----------AGGUGGCGg-UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 147617 0.66 0.970538
Target:  5'- aCUUagaGCGCAgg---AUCGCCGCGUCa -3'
miRNA:   3'- cGAAg--CGCGUaaaggUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 13416 0.67 0.944741
Target:  5'- cGCaccggCGCGCGa--CCGCCGCCGCc-- -3'
miRNA:   3'- -CGaa---GCGCGUaaaGGUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 149498 0.67 0.930176
Target:  5'- cGCUcgauUCGCGCcgUUCCcuucgGCUuaGCCagGCGUCg -3'
miRNA:   3'- -CGA----AGCGCGuaAAGG-----UGG--CGG--UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 98064 0.66 0.953252
Target:  5'- cGCUgCGCGCAgaucgUUUCGCgGCCAaaUCu -3'
miRNA:   3'- -CGAaGCGCGUa----AAGGUGgCGGUgcAG- -5'
24385 5' -53.9 NC_005264.1 + 75689 0.66 0.957157
Target:  5'- cGCggCGCGCAUgcugUUCagUACCGCgACGaUCu -3'
miRNA:   3'- -CGaaGCGCGUA----AAG--GUGGCGgUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 32985 0.66 0.964285
Target:  5'- gGC-UCGCGCAUaucgCCAUCggGCgCugGUCg -3'
miRNA:   3'- -CGaAGCGCGUAaa--GGUGG--CG-GugCAG- -5'
24385 5' -53.9 NC_005264.1 + 114754 0.66 0.967518
Target:  5'- aGCgcaGCGCGUUcuugcCCugCGCCGC-UCg -3'
miRNA:   3'- -CGaagCGCGUAAa----GGugGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 11834 0.69 0.87127
Target:  5'- cGCUguagCGCGCAUcggacacgcggcccgUCGCCGCCAC-UCg -3'
miRNA:   3'- -CGAa---GCGCGUAaa-------------GGUGGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 68429 0.69 0.887725
Target:  5'- aGCgaUCGCGCAg-UCCG-CGCCGCGgUCu -3'
miRNA:   3'- -CGa-AGCGCGUaaAGGUgGCGGUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 95822 0.68 0.901049
Target:  5'- ---cUGCGCAaggCCGCCGCUcCGUCc -3'
miRNA:   3'- cgaaGCGCGUaaaGGUGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 116390 0.68 0.913425
Target:  5'- aGCgcCGCGCAaaagCCGCagGCCgACGUCg -3'
miRNA:   3'- -CGaaGCGCGUaaa-GGUGg-CGG-UGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.