miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 148781 0.69 0.887725
Target:  5'- uCUggCGUGCAcgUUCCcacccggccCCGCCACGUCc -3'
miRNA:   3'- cGAa-GCGCGUa-AAGGu--------GGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 83225 0.67 0.944741
Target:  5'- gGCcgUUGCGCGUgggcgUCUagGCCGCCGCu-- -3'
miRNA:   3'- -CGa-AGCGCGUAa----AGG--UGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 95314 0.66 0.970538
Target:  5'- gGCa--GCGCAUggagauugCCGCCGCCggGCGcCg -3'
miRNA:   3'- -CGaagCGCGUAaa------GGUGGCGG--UGCaG- -5'
24385 5' -53.9 NC_005264.1 + 9709 0.68 0.901049
Target:  5'- uGUUUCGCGCcgcugagCCAuugugcCCGCCGCGg- -3'
miRNA:   3'- -CGAAGCGCGuaaa---GGU------GGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 147617 0.66 0.970538
Target:  5'- aCUUagaGCGCAgg---AUCGCCGCGUCa -3'
miRNA:   3'- cGAAg--CGCGUaaaggUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 90819 0.74 0.599785
Target:  5'- cGUcUCGCGUGUggCgGCCGCgCACGUCg -3'
miRNA:   3'- -CGaAGCGCGUAaaGgUGGCG-GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 114754 0.66 0.967518
Target:  5'- aGCgcaGCGCGUUcuugcCCugCGCCGC-UCg -3'
miRNA:   3'- -CGaagCGCGUAAa----GGugGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 69298 0.73 0.68222
Target:  5'- aGCUUUGCGCAguagUUCCGCCuuUuCGUCu -3'
miRNA:   3'- -CGAAGCGCGUa---AAGGUGGcgGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 114803 0.72 0.752265
Target:  5'- uGCUccaUGCGCAUUggCCACgCGCCAUGgUCg -3'
miRNA:   3'- -CGAa--GCGCGUAAa-GGUG-GCGGUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 79107 0.71 0.790128
Target:  5'- cGCagaGgGCAUcUCUGCCGCCGCGUa -3'
miRNA:   3'- -CGaagCgCGUAaAGGUGGCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 128938 0.71 0.808228
Target:  5'- cGCUcCGC-CAUgucuucuaggagUUCCACCGCCGCcUCg -3'
miRNA:   3'- -CGAaGCGcGUA------------AAGGUGGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 11834 0.69 0.87127
Target:  5'- cGCUguagCGCGCAUcggacacgcggcccgUCGCCGCCAC-UCg -3'
miRNA:   3'- -CGAa---GCGCGUAaa-------------GGUGGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 68429 0.69 0.887725
Target:  5'- aGCgaUCGCGCAg-UCCG-CGCCGCGgUCu -3'
miRNA:   3'- -CGa-AGCGCGUaaAGGUgGCGGUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 157311 0.68 0.907357
Target:  5'- cGCUcCGCGCGaga-CGCCGCgGCuGUCa -3'
miRNA:   3'- -CGAaGCGCGUaaagGUGGCGgUG-CAG- -5'
24385 5' -53.9 NC_005264.1 + 82893 0.68 0.919252
Target:  5'- uGCUUCGCccuaacuccCAUUugagaguggagUCCGCCGCagACGUCg -3'
miRNA:   3'- -CGAAGCGc--------GUAA-----------AGGUGGCGg-UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 113961 0.67 0.935273
Target:  5'- aUUUCGUGU---UCCAcCCGgCGCGUCa -3'
miRNA:   3'- cGAAGCGCGuaaAGGU-GGCgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 101604 0.67 0.944741
Target:  5'- aGCUggaGCGCg---CCAUCGCCAaCGUg -3'
miRNA:   3'- -CGAag-CGCGuaaaGGUGGCGGU-GCAg -5'
24385 5' -53.9 NC_005264.1 + 98064 0.66 0.953252
Target:  5'- cGCUgCGCGCAgaucgUUUCGCgGCCAaaUCu -3'
miRNA:   3'- -CGAaGCGCGUa----AAGGUGgCGGUgcAG- -5'
24385 5' -53.9 NC_005264.1 + 75689 0.66 0.957157
Target:  5'- cGCggCGCGCAUgcugUUCagUACCGCgACGaUCu -3'
miRNA:   3'- -CGaaGCGCGUA----AAG--GUGGCGgUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 32985 0.66 0.964285
Target:  5'- gGC-UCGCGCAUaucgCCAUCggGCgCugGUCg -3'
miRNA:   3'- -CGaAGCGCGUAaa--GGUGG--CG-GugCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.