miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 82893 0.68 0.919252
Target:  5'- uGCUUCGCccuaacuccCAUUugagaguggagUCCGCCGCagACGUCg -3'
miRNA:   3'- -CGAAGCGc--------GUAA-----------AGGUGGCGg-UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 125417 0.69 0.873484
Target:  5'- cGC-UCGUGCugcUCCACgGCCAUGcCg -3'
miRNA:   3'- -CGaAGCGCGuaaAGGUGgCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 109618 0.69 0.873484
Target:  5'- cGCuUUCGCGgAgauacgcgUCCACUaccucgGCCACGUCc -3'
miRNA:   3'- -CG-AAGCGCgUaa------AGGUGG------CGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 160340 0.73 0.702582
Target:  5'- cGCUgaagUCGCGCGaggcCCGCCGaCCAuCGUCg -3'
miRNA:   3'- -CGA----AGCGCGUaaa-GGUGGC-GGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 117678 0.69 0.873484
Target:  5'- cGCUgcCGCGCuc-UCCuGCCuCCGCGUCg -3'
miRNA:   3'- -CGAa-GCGCGuaaAGG-UGGcGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 69370 0.66 0.964285
Target:  5'- cGCgugUCGCGUAUaaaUCCucuCCGCgGCGa- -3'
miRNA:   3'- -CGa--AGCGCGUAa--AGGu--GGCGgUGCag -5'
24385 5' -53.9 NC_005264.1 + 3427 0.69 0.887725
Target:  5'- gGCggCGCGCcccacuucucagGggUCCGCCGCC-CGUg -3'
miRNA:   3'- -CGaaGCGCG------------UaaAGGUGGCGGuGCAg -5'
24385 5' -53.9 NC_005264.1 + 34985 0.69 0.873484
Target:  5'- -aUUCGCGCGccgggUUCUagaccgccgGCCGCCGCGg- -3'
miRNA:   3'- cgAAGCGCGUa----AAGG---------UGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 57907 0.71 0.780857
Target:  5'- cGCUUgGCacgGCugggggUUCCGCCGCCuuGUCu -3'
miRNA:   3'- -CGAAgCG---CGua----AAGGUGGCGGugCAG- -5'
24385 5' -53.9 NC_005264.1 + 11671 0.66 0.952849
Target:  5'- --gUCGCGCAaUUCgACCGUUaguuucucguuugGCGUCu -3'
miRNA:   3'- cgaAGCGCGUaAAGgUGGCGG-------------UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 46917 0.66 0.953252
Target:  5'- ---cCGCGCAUauggUCuCGCCGCU-CGUCu -3'
miRNA:   3'- cgaaGCGCGUAa---AG-GUGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 32919 0.66 0.957157
Target:  5'- --aUCGCGCAggggUCGCggggCGCCGCGUg -3'
miRNA:   3'- cgaAGCGCGUaaa-GGUG----GCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 29786 0.66 0.961892
Target:  5'- gGCUUUGCGagccagaaacacgCgCACCGCCGCGg- -3'
miRNA:   3'- -CGAAGCGCguaaa--------G-GUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 152012 0.66 0.964285
Target:  5'- gGC-UCGCGCAUaucgCCAUCggGCgCugGUCg -3'
miRNA:   3'- -CGaAGCGCGUAaa--GGUGG--CG-GugCAG- -5'
24385 5' -53.9 NC_005264.1 + 38868 0.66 0.964285
Target:  5'- aGCUccUCGCGgGUguaCACCGCCAaaggcacgaaGUCc -3'
miRNA:   3'- -CGA--AGCGCgUAaagGUGGCGGUg---------CAG- -5'
24385 5' -53.9 NC_005264.1 + 158234 0.66 0.964285
Target:  5'- ---aCGCGCcua--CGCCGCCGCGg- -3'
miRNA:   3'- cgaaGCGCGuaaagGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 19528 0.66 0.967518
Target:  5'- aGC-UCGgGaCGg--CCGCCGCCAaCGUUg -3'
miRNA:   3'- -CGaAGCgC-GUaaaGGUGGCGGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 3214 0.66 0.969654
Target:  5'- uCUUCGCGUAg--CCACCuaggcugagacgguGCgCAUGUCc -3'
miRNA:   3'- cGAAGCGCGUaaaGGUGG--------------CG-GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 133688 0.66 0.970538
Target:  5'- uGC-UCGcCGCgg-UCCuuGCCGCCGCG-Ca -3'
miRNA:   3'- -CGaAGC-GCGuaaAGG--UGGCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 109859 0.71 0.780857
Target:  5'- uGC-UCGCGCAccgCCugaguucgcagcACCGCCGCGUa -3'
miRNA:   3'- -CGaAGCGCGUaaaGG------------UGGCGGUGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.