Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 5' | -53.9 | NC_005264.1 | + | 123377 | 0.76 | 0.518819 |
Target: 5'- gGCUgagCGCGCGUcgcagcaugcuUUCCACCGCCcCGg- -3' miRNA: 3'- -CGAa--GCGCGUA-----------AAGGUGGCGGuGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 157079 | 0.67 | 0.943382 |
Target: 5'- --gUCGCGUGggucucccagcuuuUUUCUugCGCgGCGUCa -3' miRNA: 3'- cgaAGCGCGU--------------AAAGGugGCGgUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 32560 | 0.67 | 0.944741 |
Target: 5'- gGCUgcCGCgGUAg--CCGCCGCaACGUCg -3' miRNA: 3'- -CGAa-GCG-CGUaaaGGUGGCGgUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 39178 | 0.66 | 0.967518 |
Target: 5'- gGCUgggCGCGCGacUCUACCGCgCAUcgcuucagaGUCu -3' miRNA: 3'- -CGAa--GCGCGUaaAGGUGGCG-GUG---------CAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 19528 | 0.66 | 0.967518 |
Target: 5'- aGC-UCGgGaCGg--CCGCCGCCAaCGUUg -3' miRNA: 3'- -CGaAGCgC-GUaaaGGUGGCGGU-GCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 158234 | 0.66 | 0.964285 |
Target: 5'- ---aCGCGCcua--CGCCGCCGCGg- -3' miRNA: 3'- cgaaGCGCGuaaagGUGGCGGUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 69370 | 0.66 | 0.964285 |
Target: 5'- cGCgugUCGCGUAUaaaUCCucuCCGCgGCGa- -3' miRNA: 3'- -CGa--AGCGCGUAa--AGGu--GGCGgUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 38868 | 0.66 | 0.964285 |
Target: 5'- aGCUccUCGCGgGUguaCACCGCCAaaggcacgaaGUCc -3' miRNA: 3'- -CGA--AGCGCgUAaagGUGGCGGUg---------CAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 152012 | 0.66 | 0.964285 |
Target: 5'- gGC-UCGCGCAUaucgCCAUCggGCgCugGUCg -3' miRNA: 3'- -CGaAGCGCGUAaa--GGUGG--CG-GugCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 29786 | 0.66 | 0.961892 |
Target: 5'- gGCUUUGCGagccagaaacacgCgCACCGCCGCGg- -3' miRNA: 3'- -CGAAGCGCguaaa--------G-GUGGCGGUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 32919 | 0.66 | 0.957157 |
Target: 5'- --aUCGCGCAggggUCGCggggCGCCGCGUg -3' miRNA: 3'- cgaAGCGCGUaaa-GGUG----GCGGUGCAg -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 46917 | 0.66 | 0.953252 |
Target: 5'- ---cCGCGCAUauggUCuCGCCGCU-CGUCu -3' miRNA: 3'- cgaaGCGCGUAa---AG-GUGGCGGuGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 11671 | 0.66 | 0.952849 |
Target: 5'- --gUCGCGCAaUUCgACCGUUaguuucucguuugGCGUCu -3' miRNA: 3'- cgaAGCGCGUaAAGgUGGCGG-------------UGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 108517 | 0.66 | 0.952035 |
Target: 5'- gGCgUCGUGCGccaCCACCGUggcacacugcgucgCACGUCu -3' miRNA: 3'- -CGaAGCGCGUaaaGGUGGCG--------------GUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 146512 | 0.67 | 0.949115 |
Target: 5'- ---cCGCGCggUUCCAgaGCUacGCGUCg -3' miRNA: 3'- cgaaGCGCGuaAAGGUggCGG--UGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 136060 | 0.67 | 0.949115 |
Target: 5'- aGCccgCGUGCAggaucgagUCggaUACCGCCGCGUUg -3' miRNA: 3'- -CGaa-GCGCGUaa------AG---GUGGCGGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 132443 | 0.67 | 0.944741 |
Target: 5'- cGCaccggCGCGCGa--CCGCCGCCGCc-- -3' miRNA: 3'- -CGaa---GCGCGUaaaGGUGGCGGUGcag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 94347 | 0.67 | 0.944741 |
Target: 5'- --aUCGCGCAgugcUCgACCGCUACa-- -3' miRNA: 3'- cgaAGCGCGUaa--AGgUGGCGGUGcag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 64515 | 0.67 | 0.944741 |
Target: 5'- ---cCGCGCuguucugUCCgcGCCGCCGCGg- -3' miRNA: 3'- cgaaGCGCGuaa----AGG--UGGCGGUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 111046 | 0.67 | 0.944741 |
Target: 5'- gGC-UCGCGCGgacucgCCggacgaaguGCCGCCGCG-Cg -3' miRNA: 3'- -CGaAGCGCGUaaa---GG---------UGGCGGUGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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