miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 105347 0.66 0.960833
Target:  5'- cGCcgCGCGCGccagcaucUUcgCCGCCGCCGCc-- -3'
miRNA:   3'- -CGaaGCGCGU--------AAa-GGUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 137179 0.66 0.960833
Target:  5'- ---aCGCGaUcgUUCCGCUGCuCACGUa -3'
miRNA:   3'- cgaaGCGC-GuaAAGGUGGCG-GUGCAg -5'
24385 5' -53.9 NC_005264.1 + 25646 0.66 0.957157
Target:  5'- cGCUcCGCGU-UUUCCucaAUCGgCACGUCu -3'
miRNA:   3'- -CGAaGCGCGuAAAGG---UGGCgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 75689 0.66 0.957157
Target:  5'- cGCggCGCGCAUgcugUUCagUACCGCgACGaUCu -3'
miRNA:   3'- -CGaaGCGCGUA----AAG--GUGGCGgUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 32919 0.66 0.957157
Target:  5'- --aUCGCGCAggggUCGCggggCGCCGCGUg -3'
miRNA:   3'- cgaAGCGCGUaaa-GGUG----GCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 66444 0.66 0.95601
Target:  5'- -aUUCGgGCGcUUCCgauggggagauggcACCGCCGCGg- -3'
miRNA:   3'- cgAAGCgCGUaAAGG--------------UGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 46917 0.66 0.953252
Target:  5'- ---cCGCGCAUauggUCuCGCCGCU-CGUCu -3'
miRNA:   3'- cgaaGCGCGUAa---AG-GUGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 98064 0.66 0.953252
Target:  5'- cGCUgCGCGCAgaucgUUUCGCgGCCAaaUCu -3'
miRNA:   3'- -CGAaGCGCGUa----AAGGUGgCGGUgcAG- -5'
24385 5' -53.9 NC_005264.1 + 11671 0.66 0.952849
Target:  5'- --gUCGCGCAaUUCgACCGUUaguuucucguuugGCGUCu -3'
miRNA:   3'- cgaAGCGCGUaAAGgUGGCGG-------------UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 108517 0.66 0.952035
Target:  5'- gGCgUCGUGCGccaCCACCGUggcacacugcgucgCACGUCu -3'
miRNA:   3'- -CGaAGCGCGUaaaGGUGGCG--------------GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 139990 0.67 0.949115
Target:  5'- aGgUUCGCGCGg--CC-UCGCC-CGUCc -3'
miRNA:   3'- -CgAAGCGCGUaaaGGuGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 25002 0.67 0.949115
Target:  5'- uCUUgGCGC-UUUCCACCaG-CACGUUa -3'
miRNA:   3'- cGAAgCGCGuAAAGGUGG-CgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 136060 0.67 0.949115
Target:  5'- aGCccgCGUGCAggaucgagUCggaUACCGCCGCGUUg -3'
miRNA:   3'- -CGaa-GCGCGUaa------AG---GUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 146512 0.67 0.949115
Target:  5'- ---cCGCGCggUUCCAgaGCUacGCGUCg -3'
miRNA:   3'- cgaaGCGCGuaAAGGUggCGG--UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 64515 0.67 0.944741
Target:  5'- ---cCGCGCuguucugUCCgcGCCGCCGCGg- -3'
miRNA:   3'- cgaaGCGCGuaa----AGG--UGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 32560 0.67 0.944741
Target:  5'- gGCUgcCGCgGUAg--CCGCCGCaACGUCg -3'
miRNA:   3'- -CGAa-GCG-CGUaaaGGUGGCGgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 94347 0.67 0.944741
Target:  5'- --aUCGCGCAgugcUCgACCGCUACa-- -3'
miRNA:   3'- cgaAGCGCGUaa--AGgUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 132443 0.67 0.944741
Target:  5'- cGCaccggCGCGCGa--CCGCCGCCGCc-- -3'
miRNA:   3'- -CGaa---GCGCGUaaaGGUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 83225 0.67 0.944741
Target:  5'- gGCcgUUGCGCGUgggcgUCUagGCCGCCGCu-- -3'
miRNA:   3'- -CGa-AGCGCGUAa----AGG--UGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 111046 0.67 0.944741
Target:  5'- gGC-UCGCGCGgacucgCCggacgaaguGCCGCCGCG-Cg -3'
miRNA:   3'- -CGaAGCGCGUaaa---GG---------UGGCGGUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.