miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24386 3' -58 NC_005264.1 + 33254 0.66 0.819641
Target:  5'- aGGAAGCagcgGCgaacgcgcgauccgcGCCCcugagggcgGCGCCGCACAg- -3'
miRNA:   3'- gCCUUCGa---CG---------------CGGG---------UGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 152281 0.66 0.819641
Target:  5'- aGGAAGCagcgGCgaacgcgcgauccgcGCCCcugagggcgGCGCCGCACAg- -3'
miRNA:   3'- gCCUUCGa---CG---------------CGGG---------UGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 85782 0.66 0.81879
Target:  5'- gCGGggGCUGUuaagcuugaucaacuGCaCCcuuccuagcguuaGCGCaCGCGCGUCa -3'
miRNA:   3'- -GCCuuCGACG---------------CG-GG-------------UGCG-GUGUGUAG- -5'
24386 3' -58 NC_005264.1 + 61602 0.66 0.816226
Target:  5'- aCGcGAGCUGgaaGCCCGuCGCCGCcgGCAUa -3'
miRNA:   3'- -GCcUUCGACg--CGGGU-GCGGUG--UGUAg -5'
24386 3' -58 NC_005264.1 + 5146 0.66 0.816226
Target:  5'- -cGAuGC-GCGgCCGCGCCGCAuCGUCc -3'
miRNA:   3'- gcCUuCGaCGCgGGUGCGGUGU-GUAG- -5'
24386 3' -58 NC_005264.1 + 64400 0.66 0.815368
Target:  5'- uGGAAGCccgGCcaagGCCgACGCCGCgggcacggcgaugACGUCu -3'
miRNA:   3'- gCCUUCGa--CG----CGGgUGCGGUG-------------UGUAG- -5'
24386 3' -58 NC_005264.1 + 123178 0.67 0.798771
Target:  5'- uCGcGAuGCuUGcCGCCCACGCCGCGg--- -3'
miRNA:   3'- -GC-CUuCG-AC-GCGGGUGCGGUGUguag -5'
24386 3' -58 NC_005264.1 + 4151 0.67 0.798771
Target:  5'- uCGcGAuGCuUGcCGCCCACGCCGCGg--- -3'
miRNA:   3'- -GC-CUuCG-AC-GCGGGUGCGGUGUguag -5'
24386 3' -58 NC_005264.1 + 65399 0.67 0.797883
Target:  5'- aCGGAGG-UGCGgguaauuUCCGCGCC-CugGUCa -3'
miRNA:   3'- -GCCUUCgACGC-------GGGUGCGGuGugUAG- -5'
24386 3' -58 NC_005264.1 + 158435 0.67 0.789819
Target:  5'- aGGggGCacUGCGCUgcucaGCGCCGgagACAUCg -3'
miRNA:   3'- gCCuuCG--ACGCGGg----UGCGGUg--UGUAG- -5'
24386 3' -58 NC_005264.1 + 20505 0.67 0.789819
Target:  5'- gCGGucGCUGCGCCgAgaaGCCaggggcACGCGUUg -3'
miRNA:   3'- -GCCuuCGACGCGGgUg--CGG------UGUGUAG- -5'
24386 3' -58 NC_005264.1 + 122498 0.67 0.789819
Target:  5'- uCGGggGCgaUGgGCUUGcCGCCGCACGc- -3'
miRNA:   3'- -GCCuuCG--ACgCGGGU-GCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 39408 0.67 0.789819
Target:  5'- aGGggGCacUGCGCUgcucaGCGCCGgagACAUCg -3'
miRNA:   3'- gCCuuCG--ACGCGGg----UGCGGUg--UGUAG- -5'
24386 3' -58 NC_005264.1 + 121923 0.67 0.789819
Target:  5'- -aGAAGCUa-GCCCGCGCCGCcgACAg- -3'
miRNA:   3'- gcCUUCGAcgCGGGUGCGGUG--UGUag -5'
24386 3' -58 NC_005264.1 + 3471 0.67 0.789819
Target:  5'- uCGGggGCgaUGgGCUUGcCGCCGCACGc- -3'
miRNA:   3'- -GCCuuCG--ACgCGGGU-GCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 54169 0.67 0.789819
Target:  5'- gCGGAAaCcGCGCCCugGCCgggagacgACACGa- -3'
miRNA:   3'- -GCCUUcGaCGCGGGugCGG--------UGUGUag -5'
24386 3' -58 NC_005264.1 + 87061 0.67 0.789819
Target:  5'- uGGAGGCgaGCGCgaacgagaaCCA-GCCACACAg- -3'
miRNA:   3'- gCCUUCGa-CGCG---------GGUgCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 113869 0.67 0.780727
Target:  5'- aGGAAGaguuCUGCGCCUACuGCUuggaGCGCAg- -3'
miRNA:   3'- gCCUUC----GACGCGGGUG-CGG----UGUGUag -5'
24386 3' -58 NC_005264.1 + 95814 0.67 0.771504
Target:  5'- uCGGggGcCUGCGCaaggcCGCCGCucCGUCc -3'
miRNA:   3'- -GCCuuC-GACGCGggu--GCGGUGu-GUAG- -5'
24386 3' -58 NC_005264.1 + 128711 0.67 0.771504
Target:  5'- gGGAGGC-GgGCUCGCGCCucgACGCuguuUCg -3'
miRNA:   3'- gCCUUCGaCgCGGGUGCGG---UGUGu---AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.