miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24386 5' -53 NC_005264.1 + 120344 1.07 0.006183
Target:  5'- aGUGCUACAGAAGCUGGACACAGACCUc -3'
miRNA:   3'- -CACGAUGUCUUCGACCUGUGUCUGGA- -5'
24386 5' -53 NC_005264.1 + 71273 0.77 0.491832
Target:  5'- cGUGCUGCAGAAGCccguguacguuacuaUGGAcCACAGugUg -3'
miRNA:   3'- -CACGAUGUCUUCG---------------ACCU-GUGUCugGa -5'
24386 5' -53 NC_005264.1 + 98235 0.72 0.756357
Target:  5'- -cGCUGCGGAgaGGUuaUGGGCGCAauGACCa -3'
miRNA:   3'- caCGAUGUCU--UCG--ACCUGUGU--CUGGa -5'
24386 5' -53 NC_005264.1 + 146946 0.72 0.756357
Target:  5'- -gGC-GCAGAGGCUGGauggcGCugAGGCCg -3'
miRNA:   3'- caCGaUGUCUUCGACC-----UGugUCUGGa -5'
24386 5' -53 NC_005264.1 + 49770 0.7 0.863723
Target:  5'- -gGCUAUAGcacacuugGAGgaGGGCACGGACUa -3'
miRNA:   3'- caCGAUGUC--------UUCgaCCUGUGUCUGGa -5'
24386 5' -53 NC_005264.1 + 119290 0.69 0.886095
Target:  5'- uUGCUcGCGGuGGCUGGGCagcuGCAGACg- -3'
miRNA:   3'- cACGA-UGUCuUCGACCUG----UGUCUGga -5'
24386 5' -53 NC_005264.1 + 162252 0.69 0.893081
Target:  5'- -gGCUACGGcgGGGCUGGcGgGCGGACUa -3'
miRNA:   3'- caCGAUGUC--UUCGACC-UgUGUCUGGa -5'
24386 5' -53 NC_005264.1 + 43225 0.69 0.893081
Target:  5'- -gGCUACGGcgGGGCUGGcGgGCGGACUa -3'
miRNA:   3'- caCGAUGUC--UUCGACC-UgUGUCUGGa -5'
24386 5' -53 NC_005264.1 + 136338 0.68 0.912564
Target:  5'- -cGCggcgUAGAAGCUGGuucggcgccGCACGGGCCc -3'
miRNA:   3'- caCGau--GUCUUCGACC---------UGUGUCUGGa -5'
24386 5' -53 NC_005264.1 + 52845 0.68 0.924295
Target:  5'- aGUGCUacGCGGGAGCUGcGCGCAuacGACg- -3'
miRNA:   3'- -CACGA--UGUCUUCGACcUGUGU---CUGga -5'
24386 5' -53 NC_005264.1 + 72269 0.68 0.928161
Target:  5'- -cGCUGCAGAGGCguacUGGccggcaacgaggagACGCGGugCg -3'
miRNA:   3'- caCGAUGUCUUCG----ACC--------------UGUGUCugGa -5'
24386 5' -53 NC_005264.1 + 36244 0.68 0.929779
Target:  5'- aUGCUgccaaACGGGAGCUGG-CGC-GAUCUg -3'
miRNA:   3'- cACGA-----UGUCUUCGACCuGUGuCUGGA- -5'
24386 5' -53 NC_005264.1 + 250 0.68 0.929779
Target:  5'- uGUGCgGCGGc-GCUGGACGCGGcagaaGCCc -3'
miRNA:   3'- -CACGaUGUCuuCGACCUGUGUC-----UGGa -5'
24386 5' -53 NC_005264.1 + 59751 0.67 0.939984
Target:  5'- aUGggGCGGcGGCUGcGACGCGGACgCUu -3'
miRNA:   3'- cACgaUGUCuUCGAC-CUGUGUCUG-GA- -5'
24386 5' -53 NC_005264.1 + 125985 0.67 0.939984
Target:  5'- cGUGCUGCGGAGGa--GGgGCAGACa- -3'
miRNA:   3'- -CACGAUGUCUUCgacCUgUGUCUGga -5'
24386 5' -53 NC_005264.1 + 153882 0.67 0.944707
Target:  5'- gGUGCUGCAGcGAGUUGGcCGgcccgaAGGCCg -3'
miRNA:   3'- -CACGAUGUC-UUCGACCuGUg-----UCUGGa -5'
24386 5' -53 NC_005264.1 + 100891 0.67 0.949179
Target:  5'- aUGCUACGGggGCaGaGAUGCGgugaacgacGACCUg -3'
miRNA:   3'- cACGAUGUCuuCGaC-CUGUGU---------CUGGA- -5'
24386 5' -53 NC_005264.1 + 25086 0.67 0.949179
Target:  5'- cGUGCUGCAGAAGCgaga-ACAGGUCUu -3'
miRNA:   3'- -CACGAUGUCUUCGaccugUGUCUGGA- -5'
24386 5' -53 NC_005264.1 + 148309 0.67 0.953405
Target:  5'- -cGCUucGCAGAgucaucgcguGGCccgGGAUAUAGACCg -3'
miRNA:   3'- caCGA--UGUCU----------UCGa--CCUGUGUCUGGa -5'
24386 5' -53 NC_005264.1 + 106943 0.66 0.957387
Target:  5'- -aGCUGCGGcGGCcgcaGGAuCugAGGCCUg -3'
miRNA:   3'- caCGAUGUCuUCGa---CCU-GugUCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.