miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24387 3' -54.5 NC_005264.1 + 39476 0.66 0.953411
Target:  5'- gCGCGcucaGCCGCCagggGCAggccugcgCugUGGUGGa -3'
miRNA:   3'- -GUGCa---CGGCGGa---CGUaa------GugACCAUC- -5'
24387 3' -54.5 NC_005264.1 + 148308 0.66 0.953411
Target:  5'- gCGCGUGCgCGCCgGUGUUCguaUGGUc- -3'
miRNA:   3'- -GUGCACG-GCGGaCGUAAGug-ACCAuc -5'
24387 3' -54.5 NC_005264.1 + 158503 0.66 0.953411
Target:  5'- gCGCGcucaGCCGCCagggGCAggccugcgCugUGGUGGa -3'
miRNA:   3'- -GUGCa---CGGCGGa---CGUaa------GugACCAUC- -5'
24387 3' -54.5 NC_005264.1 + 13889 0.66 0.935384
Target:  5'- aCGCGUcGUCGCCUGCAggCGacgGGgcGc -3'
miRNA:   3'- -GUGCA-CGGCGGACGUaaGUga-CCauC- -5'
24387 3' -54.5 NC_005264.1 + 133694 0.67 0.907361
Target:  5'- cCGCGguccuUGCCGCC-GCg--CACUGGUGc -3'
miRNA:   3'- -GUGC-----ACGGCGGaCGuaaGUGACCAUc -5'
24387 3' -54.5 NC_005264.1 + 158855 0.68 0.873329
Target:  5'- gCAUGUGCCGcCCUGC-UUgGC-GGUAa -3'
miRNA:   3'- -GUGCACGGC-GGACGuAAgUGaCCAUc -5'
24387 3' -54.5 NC_005264.1 + 39829 0.68 0.873329
Target:  5'- gCAUGUGCCGcCCUGC-UUgGC-GGUAa -3'
miRNA:   3'- -GUGCACGGC-GGACGuAAgUGaCCAUc -5'
24387 3' -54.5 NC_005264.1 + 95877 0.7 0.798712
Target:  5'- -cCGUGCCGCCUggGCAccaaaaacaCGCUGGUAc -3'
miRNA:   3'- guGCACGGCGGA--CGUaa-------GUGACCAUc -5'
24387 3' -54.5 NC_005264.1 + 22024 0.7 0.789536
Target:  5'- --gGUGCCGgCUGCc-UCugUGGUAGc -3'
miRNA:   3'- gugCACGGCgGACGuaAGugACCAUC- -5'
24387 3' -54.5 NC_005264.1 + 43242 0.7 0.780215
Target:  5'- gCACGUGCCGCCUGgacugagGUUCAUcgUGGccgAGa -3'
miRNA:   3'- -GUGCACGGCGGACg------UAAGUG--ACCa--UC- -5'
24387 3' -54.5 NC_005264.1 + 155746 0.7 0.770758
Target:  5'- uUAUGguggGCCGCCUGCuaccAUUC-CUGGUGu -3'
miRNA:   3'- -GUGCa---CGGCGGACG----UAAGuGACCAUc -5'
24387 3' -54.5 NC_005264.1 + 44463 0.73 0.650094
Target:  5'- cUACGUGCaGCUgGCGUUCaagauGCUGGUAGg -3'
miRNA:   3'- -GUGCACGgCGGaCGUAAG-----UGACCAUC- -5'
24387 3' -54.5 NC_005264.1 + 139804 0.73 0.639726
Target:  5'- aCGCGUGCCGUCgGCcgUCGCgGGa-- -3'
miRNA:   3'- -GUGCACGGCGGaCGuaAGUGaCCauc -5'
24387 3' -54.5 NC_005264.1 + 119615 1.09 0.003723
Target:  5'- gCACGUGCCGCCUGCAUUCACUGGUAGg -3'
miRNA:   3'- -GUGCACGGCGGACGUAAGUGACCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.