Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24387 | 5' | -56.4 | NC_005264.1 | + | 96596 | 0.68 | 0.809109 |
Target: 5'- gUCaACGGCaaauugGAACCCAGucacgcGGCGUGGCu -3' miRNA: 3'- gAGaUGCCGg-----CUUGGGUC------CUGCACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 100479 | 0.67 | 0.873012 |
Target: 5'- gUCgcgGCGGCCaGGGCCCuGGAgGgguugcgGGCg -3' miRNA: 3'- gAGa--UGCCGG-CUUGGGuCCUgCa------CUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 101744 | 0.67 | 0.850463 |
Target: 5'- gUCUugGCGGCgCGcuCCCcaaAGGACGUGGu -3' miRNA: 3'- gAGA--UGCCG-GCuuGGG---UCCUGCACUg -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 102155 | 0.67 | 0.873012 |
Target: 5'- cCUCUGCggaGGCCuuggGAGCCCAGcuGCGcGACg -3' miRNA: 3'- -GAGAUG---CCGG----CUUGGGUCc-UGCaCUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 115540 | 0.7 | 0.725526 |
Target: 5'- --aUGCGGUCGGGCCCAuGGcguACGUGuACg -3' miRNA: 3'- gagAUGCCGGCUUGGGU-CC---UGCAC-UG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 118844 | 0.69 | 0.791416 |
Target: 5'- -gCUAUGGCCGAACUCaacaagcacGGGAacgaagaaGUGGCg -3' miRNA: 3'- gaGAUGCCGGCUUGGG---------UCCUg-------CACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 119649 | 1.09 | 0.002878 |
Target: 5'- cCUCUACGGCCGAACCCAGGACGUGACu -3' miRNA: 3'- -GAGAUGCCGGCUUGGGUCCUGCACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 121894 | 0.68 | 0.817724 |
Target: 5'- -gCUGCGGCUGcgaucgaCCGGGGCGcGGCg -3' miRNA: 3'- gaGAUGCCGGCuug----GGUCCUGCaCUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 124301 | 0.67 | 0.880114 |
Target: 5'- gUC-GCGGCCGGACggCGGGGCGgcGGCu -3' miRNA: 3'- gAGaUGCCGGCUUGg-GUCCUGCa-CUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 138176 | 0.66 | 0.906324 |
Target: 5'- ---gGCGGUCGAACCgCAGGugGccaGAa -3' miRNA: 3'- gagaUGCCGGCUUGG-GUCCugCa--CUg -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 139712 | 0.68 | 0.809109 |
Target: 5'- uCUUUAUGGCCGAGCauuaGGGACcggGGCc -3' miRNA: 3'- -GAGAUGCCGGCUUGgg--UCCUGca-CUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 141476 | 0.76 | 0.397988 |
Target: 5'- cCUCUuuccacCGGCCGAggcgGCCCGGGACGaacGGCa -3' miRNA: 3'- -GAGAu-----GCCGGCU----UGGGUCCUGCa--CUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 150829 | 0.68 | 0.809109 |
Target: 5'- ---gGCGGUCGccGCCgCAGGuCGUGACg -3' miRNA: 3'- gagaUGCCGGCu-UGG-GUCCuGCACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 159020 | 0.68 | 0.834453 |
Target: 5'- -cCUGCGGCCccGCCCGGGcccgaacucGCG-GACc -3' miRNA: 3'- gaGAUGCCGGcuUGGGUCC---------UGCaCUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 162253 | 0.67 | 0.873012 |
Target: 5'- -gCUACGGCgGGGCUgGcGGGCG-GACu -3' miRNA: 3'- gaGAUGCCGgCUUGGgU-CCUGCaCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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