Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24387 | 5' | -56.4 | NC_005264.1 | + | 41654 | 0.73 | 0.575065 |
Target: 5'- ---cGCGGCCGggUCUaAGGACGUGcGCa -3' miRNA: 3'- gagaUGCCGGCuuGGG-UCCUGCAC-UG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 138176 | 0.66 | 0.906324 |
Target: 5'- ---gGCGGUCGAACCgCAGGugGccaGAa -3' miRNA: 3'- gagaUGCCGGCUUGG-GUCCugCa--CUg -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 58989 | 0.66 | 0.900109 |
Target: 5'- aUCcccCGGCCGGGCCCAGaaGCuUGGCg -3' miRNA: 3'- gAGau-GCCGGCUUGGGUCc-UGcACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 81625 | 0.66 | 0.893666 |
Target: 5'- ---gACGGCCGAugcucauauGCCuCGcGGugGUGAUg -3' miRNA: 3'- gagaUGCCGGCU---------UGG-GU-CCugCACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 5935 | 0.67 | 0.887 |
Target: 5'- aUCUaaccACGGcCCGAACCCGcGGCGUugccuguuGACg -3' miRNA: 3'- gAGA----UGCC-GGCUUGGGUcCUGCA--------CUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 124301 | 0.67 | 0.880114 |
Target: 5'- gUC-GCGGCCGGACggCGGGGCGgcGGCu -3' miRNA: 3'- gAGaUGCCGGCUUGg-GUCCUGCa-CUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 37607 | 0.67 | 0.875878 |
Target: 5'- uCUCUGaccugauacaaggcuUGGCCGcuCUacacaAGGACGUGGCg -3' miRNA: 3'- -GAGAU---------------GCCGGCuuGGg----UCCUGCACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 162253 | 0.67 | 0.873012 |
Target: 5'- -gCUACGGCgGGGCUgGcGGGCG-GACu -3' miRNA: 3'- gaGAUGCCGgCUUGGgU-CCUGCaCUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 33067 | 0.67 | 0.865699 |
Target: 5'- aUCUGCGacGUCGcgguGCCCGGGGCG-GAUu -3' miRNA: 3'- gAGAUGC--CGGCu---UGGGUCCUGCaCUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 45122 | 0.67 | 0.865699 |
Target: 5'- uCUCUGugcuCGGCaCGcuaguAUCCGGGGCgGUGACg -3' miRNA: 3'- -GAGAU----GCCG-GCu----UGGGUCCUG-CACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 13797 | 0.67 | 0.855886 |
Target: 5'- ---aACGGU-GAACCCgggcagggggcuguGGGACGUGGCg -3' miRNA: 3'- gagaUGCCGgCUUGGG--------------UCCUGCACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 95435 | 0.68 | 0.809109 |
Target: 5'- gCUCUGCGGUU--GCCCGGaGAUGcGGCg -3' miRNA: 3'- -GAGAUGCCGGcuUGGGUC-CUGCaCUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 150829 | 0.68 | 0.809109 |
Target: 5'- ---gGCGGUCGccGCCgCAGGuCGUGACg -3' miRNA: 3'- gagaUGCCGGCu-UGG-GUCCuGCACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 46027 | 0.68 | 0.809109 |
Target: 5'- aCUCgaacccGCuGGCCGAugCCAGGGCGc--- -3' miRNA: 3'- -GAGa-----UG-CCGGCUugGGUCCUGCacug -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 96596 | 0.68 | 0.809109 |
Target: 5'- gUCaACGGCaaauugGAACCCAGucacgcGGCGUGGCu -3' miRNA: 3'- gAGaUGCCGg-----CUUGGGUC------CUGCACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 139712 | 0.68 | 0.809109 |
Target: 5'- uCUUUAUGGCCGAGCauuaGGGACcggGGCc -3' miRNA: 3'- -GAGAUGCCGGCUUGgg--UCCUGca-CUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 121894 | 0.68 | 0.817724 |
Target: 5'- -gCUGCGGCUGcgaucgaCCGGGGCGcGGCg -3' miRNA: 3'- gaGAUGCCGGCuug----GGUCCUGCaCUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 159020 | 0.68 | 0.834453 |
Target: 5'- -cCUGCGGCCccGCCCGGGcccgaacucGCG-GACc -3' miRNA: 3'- gaGAUGCCGGcuUGGGUCC---------UGCaCUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 119649 | 1.09 | 0.002878 |
Target: 5'- cCUCUACGGCCGAACCCAGGACGUGACu -3' miRNA: 3'- -GAGAUGCCGGCUUGGGUCCUGCACUG- -5' |
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24387 | 5' | -56.4 | NC_005264.1 | + | 5274 | 0.67 | 0.880114 |
Target: 5'- gUC-GCGGCCGGACggCGGGGCGgcGGCu -3' miRNA: 3'- gAGaUGCCGGCUUGg-GUCCUGCa-CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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