miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24387 5' -56.4 NC_005264.1 + 2868 0.68 0.817724
Target:  5'- -gCUGCGGCUGcgaucgaCCGGGGCGcGGCg -3'
miRNA:   3'- gaGAUGCCGGCuug----GGUCCUGCaCUG- -5'
24387 5' -56.4 NC_005264.1 + 31803 0.68 0.809109
Target:  5'- ---gGCGGUCGccGCCgCAGGuCGUGACg -3'
miRNA:   3'- gagaUGCCGGCu-UGG-GUCCuGCACUG- -5'
24387 5' -56.4 NC_005264.1 + 46027 0.68 0.809109
Target:  5'- aCUCgaacccGCuGGCCGAugCCAGGGCGc--- -3'
miRNA:   3'- -GAGa-----UG-CCGGCUugGGUCCUGCacug -5'
24387 5' -56.4 NC_005264.1 + 95435 0.68 0.809109
Target:  5'- gCUCUGCGGUU--GCCCGGaGAUGcGGCg -3'
miRNA:   3'- -GAGAUGCCGGcuUGGGUC-CUGCaCUG- -5'
24387 5' -56.4 NC_005264.1 + 150829 0.68 0.809109
Target:  5'- ---gGCGGUCGccGCCgCAGGuCGUGACg -3'
miRNA:   3'- gagaUGCCGGCu-UGG-GUCCuGCACUG- -5'
24387 5' -56.4 NC_005264.1 + 139712 0.68 0.809109
Target:  5'- uCUUUAUGGCCGAGCauuaGGGACcggGGCc -3'
miRNA:   3'- -GAGAUGCCGGCUUGgg--UCCUGca-CUG- -5'
24387 5' -56.4 NC_005264.1 + 96596 0.68 0.809109
Target:  5'- gUCaACGGCaaauugGAACCCAGucacgcGGCGUGGCu -3'
miRNA:   3'- gAGaUGCCGg-----CUUGGGUC------CUGCACUG- -5'
24387 5' -56.4 NC_005264.1 + 69851 0.68 0.800337
Target:  5'- -gCUACGGCCGGugCUGcGGcGCGUGGu -3'
miRNA:   3'- gaGAUGCCGGCUugGGU-CC-UGCACUg -5'
24387 5' -56.4 NC_005264.1 + 118844 0.69 0.791416
Target:  5'- -gCUAUGGCCGAACUCaacaagcacGGGAacgaagaaGUGGCg -3'
miRNA:   3'- gaGAUGCCGGCUUGGG---------UCCUg-------CACUG- -5'
24387 5' -56.4 NC_005264.1 + 25139 0.7 0.734278
Target:  5'- gUCU-CGGCCGAguaguuggccgugAgCgAGGACGUGGCc -3'
miRNA:   3'- gAGAuGCCGGCU-------------UgGgUCCUGCACUG- -5'
24387 5' -56.4 NC_005264.1 + 115540 0.7 0.725526
Target:  5'- --aUGCGGUCGGGCCCAuGGcguACGUGuACg -3'
miRNA:   3'- gagAUGCCGGCUUGGGU-CC---UGCAC-UG- -5'
24387 5' -56.4 NC_005264.1 + 70189 0.71 0.655776
Target:  5'- uCUUUGCGGCgCGAggGCCacgcggcaGGGAUGUGAUa -3'
miRNA:   3'- -GAGAUGCCG-GCU--UGGg-------UCCUGCACUG- -5'
24387 5' -56.4 NC_005264.1 + 41654 0.73 0.575065
Target:  5'- ---cGCGGCCGggUCUaAGGACGUGcGCa -3'
miRNA:   3'- gagaUGCCGGCuuGGG-UCCUGCAC-UG- -5'
24387 5' -56.4 NC_005264.1 + 141476 0.76 0.397988
Target:  5'- cCUCUuuccacCGGCCGAggcgGCCCGGGACGaacGGCa -3'
miRNA:   3'- -GAGAu-----GCCGGCU----UGGGUCCUGCa--CUG- -5'
24387 5' -56.4 NC_005264.1 + 119649 1.09 0.002878
Target:  5'- cCUCUACGGCCGAACCCAGGACGUGACu -3'
miRNA:   3'- -GAGAUGCCGGCUUGGGUCCUGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.