Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24388 | 5' | -61.2 | NC_005264.1 | + | 128928 | 0.67 | 0.628394 |
Target: 5'- aGCcCUgGCGGCagaaaGGCGGcGCuAUCUCg -3' miRNA: 3'- aCGuGAgCGCCGa----CCGCC-CGcUAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 129588 | 0.68 | 0.529448 |
Target: 5'- cGCGCUCuGCaGGCgcugcGGCGcGGCGGcgaagcuUCUCg -3' miRNA: 3'- aCGUGAG-CG-CCGa----CCGC-CCGCU-------AGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 135940 | 0.68 | 0.549673 |
Target: 5'- gGCACagGCGGCcGG-GGGCGAgcgaauuaCUCg -3' miRNA: 3'- aCGUGagCGCCGaCCgCCCGCUa-------GAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 139732 | 0.67 | 0.638317 |
Target: 5'- -uCGCUCGUuGGgaGGCGGGCGGc--- -3' miRNA: 3'- acGUGAGCG-CCgaCCGCCCGCUagag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 140142 | 0.69 | 0.477908 |
Target: 5'- cGCACUCGUGGCUauucauagguuucgaGGaagaGcGGCGAgacgCUCg -3' miRNA: 3'- aCGUGAGCGCCGA---------------CCg---C-CCGCUa---GAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 146774 | 0.66 | 0.677887 |
Target: 5'- aGCGCcgCGCGGCgguucucGGUGcGGCGGUgUg -3' miRNA: 3'- aCGUGa-GCGCCGa------CCGC-CCGCUAgAg -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 154815 | 0.66 | 0.647243 |
Target: 5'- gGCGCg-GUGGCgccgucgUGGCGGGCGc-CUCu -3' miRNA: 3'- aCGUGagCGCCG-------ACCGCCCGCuaGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 156168 | 0.66 | 0.70722 |
Target: 5'- cGCAUaugCGCGGCUuugcGGCGuGGCGGc--- -3' miRNA: 3'- aCGUGa--GCGCCGA----CCGC-CCGCUagag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 156169 | 0.66 | 0.677887 |
Target: 5'- gGC-CUCGCuGCUGGCGccagGAUCUCu -3' miRNA: 3'- aCGuGAGCGcCGACCGCccg-CUAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 156247 | 0.68 | 0.55939 |
Target: 5'- cGCGCUCGCcguugaccugucGGCcccUGGgGGGCGcAUCa- -3' miRNA: 3'- aCGUGAGCG------------CCG---ACCgCCCGC-UAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 156422 | 0.73 | 0.305728 |
Target: 5'- aGUGCcUGCGGCUGGCGGcgGUGAUCg- -3' miRNA: 3'- aCGUGaGCGCCGACCGCC--CGCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 156611 | 0.74 | 0.248919 |
Target: 5'- gGCAaguCUCGCGGCggccgcGGCGGGgGGUCa- -3' miRNA: 3'- aCGU---GAGCGCCGa-----CCGCCCgCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 162252 | 0.74 | 0.254774 |
Target: 5'- gGCuACggCGgGGCUGGCGGGCGGaCUa -3' miRNA: 3'- aCG-UGa-GCgCCGACCGCCCGCUaGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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