miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24388 5' -61.2 NC_005264.1 + 117426 0.66 0.687711
Target:  5'- gGCugUCGCGGC-GcGCaGGGCGccgccCUCc -3'
miRNA:   3'- aCGugAGCGCCGaC-CG-CCCGCua---GAG- -5'
24388 5' -61.2 NC_005264.1 + 106254 0.67 0.617482
Target:  5'- gGCGCUCGCGccuGCUgacGGCGGauuuaacGCGAUCc- -3'
miRNA:   3'- aCGUGAGCGC---CGA---CCGCC-------CGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 105652 0.71 0.387945
Target:  5'- gGCACggGCGGCgcuuugccGGCGGcagaccauGCGAUCUCu -3'
miRNA:   3'- aCGUGagCGCCGa-------CCGCC--------CGCUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 102647 0.66 0.648235
Target:  5'- cGCACUCGCuuGGUauuguggGGCGaGCGGUCg- -3'
miRNA:   3'- aCGUGAGCG--CCGa------CCGCcCGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 100475 0.7 0.435902
Target:  5'- cGCugUCGCGGCggccagGGCccuggagggguugcGGGCGAaagccCUCa -3'
miRNA:   3'- aCGugAGCGCCGa-----CCG--------------CCCGCUa----GAG- -5'
24388 5' -61.2 NC_005264.1 + 100412 0.66 0.697491
Target:  5'- cGCACUagaGCGGaucaaGUGGGUGAUCg- -3'
miRNA:   3'- aCGUGAg--CGCCgac--CGCCCGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 100183 0.68 0.578959
Target:  5'- cGCGCcaacgaguucggUCGCGuGCUgcgcuuggacGGCGGGCGAgaagacCUCg -3'
miRNA:   3'- aCGUG------------AGCGC-CGA----------CCGCCCGCUa-----GAG- -5'
24388 5' -61.2 NC_005264.1 + 95591 0.66 0.687711
Target:  5'- gGCucuCUCGUGGCU-GCGGGauuuCGggCUCu -3'
miRNA:   3'- aCGu--GAGCGCCGAcCGCCC----GCuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 86773 0.67 0.59867
Target:  5'- cGaCGCUCGCGGCgucGCG-GCG-UCUCu -3'
miRNA:   3'- aC-GUGAGCGCCGac-CGCcCGCuAGAG- -5'
24388 5' -61.2 NC_005264.1 + 81889 0.72 0.356428
Target:  5'- gGCGCcuUgGCGGCgaugGGCGGGCGAg--- -3'
miRNA:   3'- aCGUG--AgCGCCGa---CCGCCCGCUagag -5'
24388 5' -61.2 NC_005264.1 + 79226 0.67 0.618474
Target:  5'- cGUGCagGCGGC-GGCGGGgGuGUCUUu -3'
miRNA:   3'- aCGUGagCGCCGaCCGCCCgC-UAGAG- -5'
24388 5' -61.2 NC_005264.1 + 76505 0.67 0.596694
Target:  5'- cGCAUcguUCGCGGCcacaaacaacugGGCcuGCGAUCUCg -3'
miRNA:   3'- aCGUG---AGCGCCGa-----------CCGccCGCUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 72727 0.66 0.697491
Target:  5'- cGCACgccaCGCGGUacacuucGGCGGGCcuguccgcuggGAUCUg -3'
miRNA:   3'- aCGUGa---GCGCCGa------CCGCCCG-----------CUAGAg -5'
24388 5' -61.2 NC_005264.1 + 66469 0.67 0.637325
Target:  5'- gGCACcgcCGCGGCcagacucaaugcuUGGCGGGCugcgcggcGcgCUCg -3'
miRNA:   3'- aCGUGa--GCGCCG-------------ACCGCCCG--------CuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 51109 0.66 0.657151
Target:  5'- cUGCggucuGCUCGCGccucgacGCUGGCGGGCa----- -3'
miRNA:   3'- -ACG-----UGAGCGC-------CGACCGCCCGcuagag -5'
24388 5' -61.2 NC_005264.1 + 48085 0.66 0.677887
Target:  5'- cGCaauACUCGCGGCcGcGCGGGU--UCUg -3'
miRNA:   3'- aCG---UGAGCGCCGaC-CGCCCGcuAGAg -5'
24388 5' -61.2 NC_005264.1 + 43225 0.74 0.254774
Target:  5'- gGCuACggCGgGGCUGGCGGGCGGaCUa -3'
miRNA:   3'- aCG-UGa-GCgCCGACCGCCCGCUaGAg -5'
24388 5' -61.2 NC_005264.1 + 37584 0.74 0.248919
Target:  5'- gGCAaguCUCGCGGCggccgcGGCGGGgGGUCa- -3'
miRNA:   3'- aCGU---GAGCGCCGa-----CCGCCCgCUAGag -5'
24388 5' -61.2 NC_005264.1 + 37220 0.68 0.55939
Target:  5'- cGCGCUCGCcguugaccugucGGCcccUGGgGGGCGcAUCa- -3'
miRNA:   3'- aCGUGAGCG------------CCG---ACCgCCCGC-UAGag -5'
24388 5' -61.2 NC_005264.1 + 37142 0.66 0.677887
Target:  5'- gGC-CUCGCuGCUGGCGccagGAUCUCu -3'
miRNA:   3'- aCGuGAGCGcCGACCGCccg-CUAGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.