miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24388 5' -61.2 NC_005264.1 + 26361 0.7 0.46518
Target:  5'- gUGCGC-CGCGGCaGGCugcgcGGCGccGUCUCu -3'
miRNA:   3'- -ACGUGaGCGCCGaCCGc----CCGC--UAGAG- -5'
24388 5' -61.2 NC_005264.1 + 43225 0.74 0.254774
Target:  5'- gGCuACggCGgGGCUGGCGGGCGGaCUa -3'
miRNA:   3'- aCG-UGa-GCgCCGACCGCCCGCUaGAg -5'
24388 5' -61.2 NC_005264.1 + 139732 0.67 0.638317
Target:  5'- -uCGCUCGUuGGgaGGCGGGCGGc--- -3'
miRNA:   3'- acGUGAGCG-CCgaCCGCCCGCUagag -5'
24388 5' -61.2 NC_005264.1 + 127836 0.7 0.43852
Target:  5'- uUGC-CUcCGCGGC-GGCcGGCGGUCUa -3'
miRNA:   3'- -ACGuGA-GCGCCGaCCGcCCGCUAGAg -5'
24388 5' -61.2 NC_005264.1 + 4607 0.71 0.379896
Target:  5'- aGCGC-CGCGGC-GGCGuaGGCGcguUCUCg -3'
miRNA:   3'- aCGUGaGCGCCGaCCGC--CCGCu--AGAG- -5'
24388 5' -61.2 NC_005264.1 + 37584 0.74 0.248919
Target:  5'- gGCAaguCUCGCGGCggccgcGGCGGGgGGUCa- -3'
miRNA:   3'- aCGU---GAGCGCCGa-----CCGCCCgCUAGag -5'
24388 5' -61.2 NC_005264.1 + 129588 0.68 0.529448
Target:  5'- cGCGCUCuGCaGGCgcugcGGCGcGGCGGcgaagcuUCUCg -3'
miRNA:   3'- aCGUGAG-CG-CCGa----CCGC-CCGCU-------AGAG- -5'
24388 5' -61.2 NC_005264.1 + 105652 0.71 0.387945
Target:  5'- gGCACggGCGGCgcuuugccGGCGGcagaccauGCGAUCUCu -3'
miRNA:   3'- aCGUGagCGCCGa-------CCGCC--------CGCUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 100475 0.7 0.435902
Target:  5'- cGCugUCGCGGCggccagGGCccuggagggguugcGGGCGAaagccCUCa -3'
miRNA:   3'- aCGugAGCGCCGa-----CCG--------------CCCGCUa----GAG- -5'
24388 5' -61.2 NC_005264.1 + 106254 0.67 0.617482
Target:  5'- gGCGCUCGCGccuGCUgacGGCGGauuuaacGCGAUCc- -3'
miRNA:   3'- aCGUGAGCGC---CGA---CCGCC-------CGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 123634 0.71 0.379896
Target:  5'- aGCGC-CGCGGC-GGCGuaGGCGcguUCUCg -3'
miRNA:   3'- aCGUGaGCGCCGaCCGC--CCGCu--AGAG- -5'
24388 5' -61.2 NC_005264.1 + 146774 0.66 0.677887
Target:  5'- aGCGCcgCGCGGCgguucucGGUGcGGCGGUgUg -3'
miRNA:   3'- aCGUGa-GCGCCGa------CCGC-CCGCUAgAg -5'
24388 5' -61.2 NC_005264.1 + 34481 0.68 0.55647
Target:  5'- cGCGCUUcaggaggacguucgGCGGgaaUGGgGGGCGGUgUCa -3'
miRNA:   3'- aCGUGAG--------------CGCCg--ACCgCCCGCUAgAG- -5'
24388 5' -61.2 NC_005264.1 + 3987 0.66 0.687711
Target:  5'- aGcCGCUUcgGCGGC-GGCGGGU--UCUCu -3'
miRNA:   3'- aC-GUGAG--CGCCGaCCGCCCGcuAGAG- -5'
24388 5' -61.2 NC_005264.1 + 156247 0.68 0.55939
Target:  5'- cGCGCUCGCcguugaccugucGGCcccUGGgGGGCGcAUCa- -3'
miRNA:   3'- aCGUGAGCG------------CCG---ACCgCCCGC-UAGag -5'
24388 5' -61.2 NC_005264.1 + 117426 0.66 0.687711
Target:  5'- gGCugUCGCGGC-GcGCaGGGCGccgccCUCc -3'
miRNA:   3'- aCGugAGCGCCGaC-CG-CCCGCua---GAG- -5'
24388 5' -61.2 NC_005264.1 + 128928 0.67 0.628394
Target:  5'- aGCcCUgGCGGCagaaaGGCGGcGCuAUCUCg -3'
miRNA:   3'- aCGuGAgCGCCGa----CCGCC-CGcUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 156169 0.66 0.677887
Target:  5'- gGC-CUCGCuGCUGGCGccagGAUCUCu -3'
miRNA:   3'- aCGuGAGCGcCGACCGCccg-CUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 79226 0.67 0.618474
Target:  5'- cGUGCagGCGGC-GGCGGGgGuGUCUUu -3'
miRNA:   3'- aCGUGagCGCCGaCCGCCCgC-UAGAG- -5'
24388 5' -61.2 NC_005264.1 + 86773 0.67 0.59867
Target:  5'- cGaCGCUCGCGGCgucGCG-GCG-UCUCu -3'
miRNA:   3'- aC-GUGAGCGCCGac-CGCcCGCuAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.