miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24388 5' -61.2 NC_005264.1 + 139732 0.67 0.638317
Target:  5'- -uCGCUCGUuGGgaGGCGGGCGGc--- -3'
miRNA:   3'- acGUGAGCG-CCgaCCGCCCGCUagag -5'
24388 5' -61.2 NC_005264.1 + 66469 0.67 0.637325
Target:  5'- gGCACcgcCGCGGCcagacucaaugcuUGGCGGGCugcgcggcGcgCUCg -3'
miRNA:   3'- aCGUGa--GCGCCG-------------ACCGCCCG--------CuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 128928 0.67 0.628394
Target:  5'- aGCcCUgGCGGCagaaaGGCGGcGCuAUCUCg -3'
miRNA:   3'- aCGuGAgCGCCGa----CCGCC-CGcUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 9902 0.67 0.628394
Target:  5'- aGCcCUgGCGGCagaaaGGCGGcGCuAUCUCg -3'
miRNA:   3'- aCGuGAgCGCCGa----CCGCC-CGcUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 79226 0.67 0.618474
Target:  5'- cGUGCagGCGGC-GGCGGGgGuGUCUUu -3'
miRNA:   3'- aCGUGagCGCCGaCCGCCCgC-UAGAG- -5'
24388 5' -61.2 NC_005264.1 + 106254 0.67 0.617482
Target:  5'- gGCGCUCGCGccuGCUgacGGCGGauuuaacGCGAUCc- -3'
miRNA:   3'- aCGUGAGCGC---CGA---CCGCC-------CGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 17351 0.67 0.59867
Target:  5'- gUGC-CUucCGCGGCagcuggcGGCGGcGCGGUCUg -3'
miRNA:   3'- -ACGuGA--GCGCCGa------CCGCC-CGCUAGAg -5'
24388 5' -61.2 NC_005264.1 + 86773 0.67 0.59867
Target:  5'- cGaCGCUCGCGGCgucGCG-GCG-UCUCu -3'
miRNA:   3'- aC-GUGAGCGCCGac-CGCcCGCuAGAG- -5'
24388 5' -61.2 NC_005264.1 + 76505 0.67 0.596694
Target:  5'- cGCAUcguUCGCGGCcacaaacaacugGGCcuGCGAUCUCg -3'
miRNA:   3'- aCGUG---AGCGCCGa-----------CCGccCGCUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 121915 0.68 0.578959
Target:  5'- gGCGCggCGCGGCgGGgaGGGCGAc--- -3'
miRNA:   3'- aCGUGa-GCGCCGaCCg-CCCGCUagag -5'
24388 5' -61.2 NC_005264.1 + 22231 0.68 0.578959
Target:  5'- cGC-CUCGuCGGC-GGUcuGGGCGGUCg- -3'
miRNA:   3'- aCGuGAGC-GCCGaCCG--CCCGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 2889 0.68 0.578959
Target:  5'- gGCGCggCGCGGCgGGgaGGGCGAc--- -3'
miRNA:   3'- aCGUGa-GCGCCGaCCg-CCCGCUagag -5'
24388 5' -61.2 NC_005264.1 + 100183 0.68 0.578959
Target:  5'- cGCGCcaacgaguucggUCGCGuGCUgcgcuuggacGGCGGGCGAgaagacCUCg -3'
miRNA:   3'- aCGUG------------AGCGC-CGA----------CCGCCCGCUa-----GAG- -5'
24388 5' -61.2 NC_005264.1 + 37220 0.68 0.55939
Target:  5'- cGCGCUCGCcguugaccugucGGCcccUGGgGGGCGcAUCa- -3'
miRNA:   3'- aCGUGAGCG------------CCG---ACCgCCCGC-UAGag -5'
24388 5' -61.2 NC_005264.1 + 156247 0.68 0.55939
Target:  5'- cGCGCUCGCcguugaccugucGGCcccUGGgGGGCGcAUCa- -3'
miRNA:   3'- aCGUGAGCG------------CCG---ACCgCCCGC-UAGag -5'
24388 5' -61.2 NC_005264.1 + 34481 0.68 0.55647
Target:  5'- cGCGCUUcaggaggacguucgGCGGgaaUGGgGGGCGGUgUCa -3'
miRNA:   3'- aCGUGAG--------------CGCCg--ACCgCCCGCUAgAG- -5'
24388 5' -61.2 NC_005264.1 + 135940 0.68 0.549673
Target:  5'- gGCACagGCGGCcGG-GGGCGAgcgaauuaCUCg -3'
miRNA:   3'- aCGUGagCGCCGaCCgCCCGCUa-------GAG- -5'
24388 5' -61.2 NC_005264.1 + 129588 0.68 0.529448
Target:  5'- cGCGCUCuGCaGGCgcugcGGCGcGGCGGcgaagcuUCUCg -3'
miRNA:   3'- aCGUGAG-CG-CCGa----CCGC-CCGCU-------AGAG- -5'
24388 5' -61.2 NC_005264.1 + 140142 0.69 0.477908
Target:  5'- cGCACUCGUGGCUauucauagguuucgaGGaagaGcGGCGAgacgCUCg -3'
miRNA:   3'- aCGUGAGCGCCGA---------------CCg---C-CCGCUa---GAG- -5'
24388 5' -61.2 NC_005264.1 + 26361 0.7 0.46518
Target:  5'- gUGCGC-CGCGGCaGGCugcgcGGCGccGUCUCu -3'
miRNA:   3'- -ACGUGaGCGCCGaCCGc----CCGC--UAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.