miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 3' -53.2 NC_005264.1 + 130972 0.7 0.895667
Target:  5'- -aGGCGUGCG-CCGacCGCGAGGcgcUGGa -3'
miRNA:   3'- caUUGCGCGCuGGU--GCGCUCCaa-ACC- -5'
24389 3' -53.2 NC_005264.1 + 19487 0.7 0.895667
Target:  5'- cUGACGCGC-ACC-UGCGAGGUUc-- -3'
miRNA:   3'- cAUUGCGCGcUGGuGCGCUCCAAacc -5'
24389 3' -53.2 NC_005264.1 + 2509 0.7 0.874876
Target:  5'- ---uCGCGCGACUucaGCGCGGGGg---- -3'
miRNA:   3'- cauuGCGCGCUGG---UGCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 49366 0.7 0.895667
Target:  5'- ---uCGCGCGACCGuggcacgacCGCGGGGUc-GGu -3'
miRNA:   3'- cauuGCGCGCUGGU---------GCGCUCCAaaCC- -5'
24389 3' -53.2 NC_005264.1 + 114808 0.69 0.908375
Target:  5'- --cAUGCGCauuGGCCACGCGccauGGUcgUGGg -3'
miRNA:   3'- cauUGCGCG---CUGGUGCGCu---CCAa-ACC- -5'
24389 3' -53.2 NC_005264.1 + 84707 0.69 0.925653
Target:  5'- --uACGCGCGG----GUGAGGUUUGGg -3'
miRNA:   3'- cauUGCGCGCUggugCGCUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 104034 0.69 0.925653
Target:  5'- uUGACGCGCG-CCGCG-GAaaucGGUUUGc -3'
miRNA:   3'- cAUUGCGCGCuGGUGCgCU----CCAAACc -5'
24389 3' -53.2 NC_005264.1 + 150687 0.69 0.902138
Target:  5'- uGUGACGCGaa--CGCGCGAGGcagGGc -3'
miRNA:   3'- -CAUUGCGCgcugGUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 82651 0.69 0.902138
Target:  5'- ---cCGCGCcucuccuuucaaGACCGCGCGcAGGUUaucggUGGg -3'
miRNA:   3'- cauuGCGCG------------CUGGUGCGC-UCCAA-----ACC- -5'
24389 3' -53.2 NC_005264.1 + 148305 0.69 0.914374
Target:  5'- --cGCGCGCGugCGCGCcGGuGUUcguaUGGu -3'
miRNA:   3'- cauUGCGCGCugGUGCGcUC-CAA----ACC- -5'
24389 3' -53.2 NC_005264.1 + 162226 0.68 0.93093
Target:  5'- -cGACGCG-GGCCG-GCGGGGgggGGg -3'
miRNA:   3'- caUUGCGCgCUGGUgCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 70195 0.68 0.93093
Target:  5'- -cGGCGCGagGGCCACGCGgcAGGgaUGu -3'
miRNA:   3'- caUUGCGCg-CUGGUGCGC--UCCaaACc -5'
24389 3' -53.2 NC_005264.1 + 77414 0.68 0.93093
Target:  5'- aUAugGauaGCGACgACGUGAGGg-UGGu -3'
miRNA:   3'- cAUugCg--CGCUGgUGCGCUCCaaACC- -5'
24389 3' -53.2 NC_005264.1 + 130555 0.68 0.945323
Target:  5'- -cGGCGCGUGuGCUACGCGcAGGUc--- -3'
miRNA:   3'- caUUGCGCGC-UGGUGCGC-UCCAaacc -5'
24389 3' -53.2 NC_005264.1 + 70582 0.68 0.93093
Target:  5'- cGUGGCGaagaGCGcGCUugGCGAGGcg-GGc -3'
miRNA:   3'- -CAUUGCg---CGC-UGGugCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 43199 0.68 0.93093
Target:  5'- -cGACGCG-GGCCG-GCGGGGgggGGg -3'
miRNA:   3'- caUUGCGCgCUGGUgCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 16674 0.68 0.935968
Target:  5'- --cACGCGaCGugCAUGCGAGGc---- -3'
miRNA:   3'- cauUGCGC-GCugGUGCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 83187 0.68 0.93093
Target:  5'- uGUAACagaGUuaACUGCGCGAGGUUUGGc -3'
miRNA:   3'- -CAUUGcg-CGc-UGGUGCGCUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 14888 0.68 0.935968
Target:  5'- -aGACGCGCGuCCAUGCuuauGGacgUGGa -3'
miRNA:   3'- caUUGCGCGCuGGUGCGcu--CCaa-ACC- -5'
24389 3' -53.2 NC_005264.1 + 157003 0.68 0.953733
Target:  5'- aUAAC-CGCGGCCAgGCGAG---UGGc -3'
miRNA:   3'- cAUUGcGCGCUGGUgCGCUCcaaACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.