miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 3' -53.2 NC_005264.1 + 83187 0.68 0.93093
Target:  5'- uGUAACagaGUuaACUGCGCGAGGUUUGGc -3'
miRNA:   3'- -CAUUGcg-CGc-UGGUGCGCUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 84707 0.69 0.925653
Target:  5'- --uACGCGCGG----GUGAGGUUUGGg -3'
miRNA:   3'- cauUGCGCGCUggugCGCUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 85425 0.67 0.96783
Target:  5'- -cAACGC-CGACCGCGCGgacAGGg---- -3'
miRNA:   3'- caUUGCGcGCUGGUGCGC---UCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 87366 0.66 0.980783
Target:  5'- -cAACGCGCGAcuggccaccCCAgGCGGacUUUGGg -3'
miRNA:   3'- caUUGCGCGCU---------GGUgCGCUccAAACC- -5'
24389 3' -53.2 NC_005264.1 + 87653 0.66 0.973595
Target:  5'- -gGGCGCGgGACCugGCGGcaacgGGc -3'
miRNA:   3'- caUUGCGCgCUGGugCGCUccaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 98219 0.66 0.976179
Target:  5'- -cAACgGCGUcgGGCCGCGCugcggaGAGGUUaUGGg -3'
miRNA:   3'- caUUG-CGCG--CUGGUGCG------CUCCAA-ACC- -5'
24389 3' -53.2 NC_005264.1 + 101485 0.68 0.935968
Target:  5'- -cGACGCuuugaCGGCCAUGCGGGaGUUgcacgGGg -3'
miRNA:   3'- caUUGCGc----GCUGGUGCGCUC-CAAa----CC- -5'
24389 3' -53.2 NC_005264.1 + 104034 0.69 0.925653
Target:  5'- uUGACGCGCG-CCGCG-GAaaucGGUUUGc -3'
miRNA:   3'- cAUUGCGCGCuGGUGCgCU----CCAAACc -5'
24389 3' -53.2 NC_005264.1 + 104697 0.66 0.973326
Target:  5'- aUAACGUGacggagcaccagaCGGCUGCGCGAGGUc--- -3'
miRNA:   3'- cAUUGCGC-------------GCUGGUGCGCUCCAaacc -5'
24389 3' -53.2 NC_005264.1 + 109706 0.67 0.96783
Target:  5'- cGUAGCGCuacugaagugGCGAgaaUACGCGAGGccgcUGGa -3'
miRNA:   3'- -CAUUGCG----------CGCUg--GUGCGCUCCaa--ACC- -5'
24389 3' -53.2 NC_005264.1 + 113517 0.66 0.976179
Target:  5'- -gAGCGCGaacaGCCGCGgGAGGUccUUGu -3'
miRNA:   3'- caUUGCGCgc--UGGUGCgCUCCA--AACc -5'
24389 3' -53.2 NC_005264.1 + 114191 0.71 0.851328
Target:  5'- gGUAACGuCGCGGaucuggauggcacCCGCGCaAGGUUUGa -3'
miRNA:   3'- -CAUUGC-GCGCU-------------GGUGCGcUCCAAACc -5'
24389 3' -53.2 NC_005264.1 + 114808 0.69 0.908375
Target:  5'- --cAUGCGCauuGGCCACGCGccauGGUcgUGGg -3'
miRNA:   3'- cauUGCGCG---CUGGUGCGCu---CCAa-ACC- -5'
24389 3' -53.2 NC_005264.1 + 115807 0.67 0.961223
Target:  5'- --cACGUGgGACCGCGgGAGGc---- -3'
miRNA:   3'- cauUGCGCgCUGGUGCgCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 119215 1.1 0.005397
Target:  5'- cGUAACGCGCGACCACGCGAGGUUUGGc -3'
miRNA:   3'- -CAUUGCGCGCUGGUGCGCUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 120231 0.67 0.961223
Target:  5'- -gGGCGUccGCGGCCAUggcuGCGGGGUUg-- -3'
miRNA:   3'- caUUGCG--CGCUGGUG----CGCUCCAAacc -5'
24389 3' -53.2 NC_005264.1 + 121454 0.66 0.976179
Target:  5'- -cAGCGCGCGGCCuACGCguacauuagaGAGGc---- -3'
miRNA:   3'- caUUGCGCGCUGG-UGCG----------CUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 121536 0.7 0.874876
Target:  5'- ---uCGCGCGACUucaGCGCGGGGg---- -3'
miRNA:   3'- cauuGCGCGCUGG---UGCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 122206 0.73 0.745104
Target:  5'- --cGCGuCGCGACgGCGCGGGGaagGGc -3'
miRNA:   3'- cauUGC-GCGCUGgUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 122426 0.66 0.982818
Target:  5'- -gAACGCGgGGUCgguGCGCGGGGgagGGa -3'
miRNA:   3'- caUUGCGCgCUGG---UGCGCUCCaaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.