miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 3' -53.2 NC_005264.1 + 125515 0.66 0.976179
Target:  5'- ---gUGCGCGGCCAU-CGAGGgccGGu -3'
miRNA:   3'- cauuGCGCGCUGGUGcGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 129495 0.66 0.980783
Target:  5'- -----uUGCGGCgGCGCaGGGUUUGGc -3'
miRNA:   3'- cauugcGCGCUGgUGCGcUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 130555 0.68 0.945323
Target:  5'- -cGGCGCGUGuGCUACGCGcAGGUc--- -3'
miRNA:   3'- caUUGCGCGC-UGGUGCGC-UCCAaacc -5'
24389 3' -53.2 NC_005264.1 + 130972 0.7 0.895667
Target:  5'- -aGGCGUGCG-CCGacCGCGAGGcgcUGGa -3'
miRNA:   3'- caUUGCGCGCuGGU--GCGCUCCaa-ACC- -5'
24389 3' -53.2 NC_005264.1 + 131575 0.67 0.964635
Target:  5'- ---gUGCGCGgcACCugGCGccuAGGUgUGGa -3'
miRNA:   3'- cauuGCGCGC--UGGugCGC---UCCAaACC- -5'
24389 3' -53.2 NC_005264.1 + 133066 0.72 0.801379
Target:  5'- cGUGGCGUGCGAgCCGCgaGCGAGcugUGGu -3'
miRNA:   3'- -CAUUGCGCGCU-GGUG--CGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 146080 0.72 0.792334
Target:  5'- -cAGCGCGCccCCGCGCG-GGUcUUGGu -3'
miRNA:   3'- caUUGCGCGcuGGUGCGCuCCA-AACC- -5'
24389 3' -53.2 NC_005264.1 + 147782 0.66 0.973595
Target:  5'- cGUGGacCGCGCGaACUGCGCGAcggaGGUgaGGu -3'
miRNA:   3'- -CAUU--GCGCGC-UGGUGCGCU----CCAaaCC- -5'
24389 3' -53.2 NC_005264.1 + 148305 0.69 0.914374
Target:  5'- --cGCGCGCGugCGCGCcGGuGUUcguaUGGu -3'
miRNA:   3'- cauUGCGCGCugGUGCGcUC-CAA----ACC- -5'
24389 3' -53.2 NC_005264.1 + 150687 0.69 0.902138
Target:  5'- uGUGACGCGaa--CGCGCGAGGcagGGc -3'
miRNA:   3'- -CAUUGCGCgcugGUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 152294 0.73 0.76436
Target:  5'- -gAACGCGCGAuCCGCGCcccuGAGGgc-GGc -3'
miRNA:   3'- caUUGCGCGCU-GGUGCG----CUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 152971 0.67 0.961223
Target:  5'- cGUGGCGCGCcggGACCGCGCccgauaGGGGccgcUUGa -3'
miRNA:   3'- -CAUUGCGCG---CUGGUGCG------CUCCa---AACc -5'
24389 3' -53.2 NC_005264.1 + 153373 0.71 0.859914
Target:  5'- -aGACGCGCGAagcgUUGCGCGAGGg---- -3'
miRNA:   3'- caUUGCGCGCU----GGUGCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 155242 0.78 0.464829
Target:  5'- --uGCGCGCaGACCAgagccCGCGAGGUUUaGGg -3'
miRNA:   3'- cauUGCGCG-CUGGU-----GCGCUCCAAA-CC- -5'
24389 3' -53.2 NC_005264.1 + 156615 0.67 0.961223
Target:  5'- aGUcuCGCgGCGGCCGCGgCGGGGggucaaaGGa -3'
miRNA:   3'- -CAuuGCG-CGCUGGUGC-GCUCCaaa----CC- -5'
24389 3' -53.2 NC_005264.1 + 157003 0.68 0.953733
Target:  5'- aUAAC-CGCGGCCAgGCGAG---UGGc -3'
miRNA:   3'- cAUUGcGCGCUGGUgCGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 159539 0.71 0.827555
Target:  5'- -cGGCGCGCGAucCCGCGCGAGc----- -3'
miRNA:   3'- caUUGCGCGCU--GGUGCGCUCcaaacc -5'
24389 3' -53.2 NC_005264.1 + 159993 0.67 0.964635
Target:  5'- -cAGCGgGCGACgGCGCGAGc----- -3'
miRNA:   3'- caUUGCgCGCUGgUGCGCUCcaaacc -5'
24389 3' -53.2 NC_005264.1 + 162226 0.68 0.93093
Target:  5'- -cGACGCG-GGCCG-GCGGGGgggGGg -3'
miRNA:   3'- caUUGCGCgCUGGUgCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 162756 0.67 0.964635
Target:  5'- --cGCGUGCG-CCGauaagUGCGAGGUgcUGGa -3'
miRNA:   3'- cauUGCGCGCuGGU-----GCGCUCCAa-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.