Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24389 | 3' | -53.2 | NC_005264.1 | + | 104697 | 0.66 | 0.973326 |
Target: 5'- aUAACGUGacggagcaccagaCGGCUGCGCGAGGUc--- -3' miRNA: 3'- cAUUGCGC-------------GCUGGUGCGCUCCAaacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 87653 | 0.66 | 0.973595 |
Target: 5'- -gGGCGCGgGACCugGCGGcaacgGGc -3' miRNA: 3'- caUUGCGCgCUGGugCGCUccaaaCC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 147782 | 0.66 | 0.973595 |
Target: 5'- cGUGGacCGCGCGaACUGCGCGAcggaGGUgaGGu -3' miRNA: 3'- -CAUU--GCGCGC-UGGUGCGCU----CCAaaCC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 51808 | 0.66 | 0.973595 |
Target: 5'- ---cCGCGCGAgCCAcCGCuucgaaccaggaGAGGggUGGg -3' miRNA: 3'- cauuGCGCGCU-GGU-GCG------------CUCCaaACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 6488 | 0.66 | 0.976179 |
Target: 5'- ---gUGCGCGGCCAU-CGAGGgccGGu -3' miRNA: 3'- cauuGCGCGCUGGUGcGCUCCaaaCC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 113517 | 0.66 | 0.976179 |
Target: 5'- -gAGCGCGaacaGCCGCGgGAGGUccUUGu -3' miRNA: 3'- caUUGCGCgc--UGGUGCgCUCCA--AACc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 121454 | 0.66 | 0.976179 |
Target: 5'- -cAGCGCGCGGCCuACGCguacauuagaGAGGc---- -3' miRNA: 3'- caUUGCGCGCUGG-UGCG----------CUCCaaacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 129495 | 0.66 | 0.980783 |
Target: 5'- -----uUGCGGCgGCGCaGGGUUUGGc -3' miRNA: 3'- cauugcGCGCUGgUGCGcUCCAAACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 74238 | 0.67 | 0.970814 |
Target: 5'- cGUAGCGCGCuGGCCGCGCuccagacacGGcGGUagaggcgGGg -3' miRNA: 3'- -CAUUGCGCG-CUGGUGCG---------CU-CCAaa-----CC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 109706 | 0.67 | 0.96783 |
Target: 5'- cGUAGCGCuacugaagugGCGAgaaUACGCGAGGccgcUGGa -3' miRNA: 3'- -CAUUGCG----------CGCUg--GUGCGCUCCaa--ACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 85425 | 0.67 | 0.96783 |
Target: 5'- -cAACGC-CGACCGCGCGgacAGGg---- -3' miRNA: 3'- caUUGCGcGCUGGUGCGC---UCCaaacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 37976 | 0.68 | 0.953733 |
Target: 5'- aUAAC-CGCGGCCAgGCGAG---UGGc -3' miRNA: 3'- cAUUGcGCGCUGGUgCGCUCcaaACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 77022 | 0.67 | 0.957591 |
Target: 5'- aGUGACGCGCGugUcgcuaACGCuAGGaagGGu -3' miRNA: 3'- -CAUUGCGCGCugG-----UGCGcUCCaaaCC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 37588 | 0.67 | 0.961223 |
Target: 5'- aGUcuCGCgGCGGCCGCGgCGGGGggucaaaGGa -3' miRNA: 3'- -CAuuGCG-CGCUGGUGC-GCUCCaaa----CC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 1204 | 0.67 | 0.961223 |
Target: 5'- -gGGCGUccGCGGCCAUggcuGCGGGGUUg-- -3' miRNA: 3'- caUUGCG--CGCUGGUG----CGCUCCAAacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 33944 | 0.67 | 0.961223 |
Target: 5'- cGUGGCGCGCcggGACCGCGCccgauaGGGGccgcUUGa -3' miRNA: 3'- -CAUUGCGCG---CUGGUGCG------CUCCa---AACc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 40966 | 0.67 | 0.964635 |
Target: 5'- -cAGCGgGCGACgGCGCGAGc----- -3' miRNA: 3'- caUUGCgCGCUGgUGCGCUCcaaacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 131575 | 0.67 | 0.964635 |
Target: 5'- ---gUGCGCGgcACCugGCGccuAGGUgUGGa -3' miRNA: 3'- cauuGCGCGC--UGGugCGC---UCCAaACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 43730 | 0.67 | 0.964635 |
Target: 5'- --cGCGUGCG-CCGauaagUGCGAGGUgcUGGa -3' miRNA: 3'- cauUGCGCGCuGGU-----GCGCUCCAa-ACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 3399 | 0.66 | 0.982818 |
Target: 5'- -gAACGCGgGGUCgguGCGCGGGGgagGGa -3' miRNA: 3'- caUUGCGCgCUGG---UGCGCUCCaaaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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