miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 3' -53.2 NC_005264.1 + 33267 0.73 0.76436
Target:  5'- -gAACGCGCGAuCCGCGCcccuGAGGgc-GGc -3'
miRNA:   3'- caUUGCGCGCU-GGUGCG----CUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 104034 0.69 0.925653
Target:  5'- uUGACGCGCG-CCGCG-GAaaucGGUUUGc -3'
miRNA:   3'- cAUUGCGCGCuGGUGCgCU----CCAAACc -5'
24389 3' -53.2 NC_005264.1 + 43199 0.68 0.93093
Target:  5'- -cGACGCG-GGCCG-GCGGGGgggGGg -3'
miRNA:   3'- caUUGCGCgCUGGUgCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 52208 0.66 0.973595
Target:  5'- cGUGGgGCGCGGugGCGCGAGc--UGGu -3'
miRNA:   3'- -CAUUgCGCGCUggUGCGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 23217 0.7 0.874876
Target:  5'- ---cCGUGCcGCCGCGCGAGuugUUGGa -3'
miRNA:   3'- cauuGCGCGcUGGUGCGCUCca-AACC- -5'
24389 3' -53.2 NC_005264.1 + 133066 0.72 0.801379
Target:  5'- cGUGGCGUGCGAgCCGCgaGCGAGcugUGGu -3'
miRNA:   3'- -CAUUGCGCGCU-GGUG--CGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 122206 0.73 0.745104
Target:  5'- --cGCGuCGCGACgGCGCGGGGaagGGc -3'
miRNA:   3'- cauUGC-GCGCUGgUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 150687 0.69 0.902138
Target:  5'- uGUGACGCGaa--CGCGCGAGGcagGGc -3'
miRNA:   3'- -CAUUGCGCgcugGUGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 82651 0.69 0.902138
Target:  5'- ---cCGCGCcucuccuuucaaGACCGCGCGcAGGUUaucggUGGg -3'
miRNA:   3'- cauuGCGCG------------CUGGUGCGC-UCCAA-----ACC- -5'
24389 3' -53.2 NC_005264.1 + 148305 0.69 0.914374
Target:  5'- --cGCGCGCGugCGCGCcGGuGUUcguaUGGu -3'
miRNA:   3'- cauUGCGCGCugGUGCGcUC-CAA----ACC- -5'
24389 3' -53.2 NC_005264.1 + 35473 0.67 0.96783
Target:  5'- cUGACGCgagagugccGCGGCCGauCGCGAcGGcUUGGu -3'
miRNA:   3'- cAUUGCG---------CGCUGGU--GCGCU-CCaAACC- -5'
24389 3' -53.2 NC_005264.1 + 78596 0.67 0.96783
Target:  5'- -cAGCGCGUGuCCACGCGguAGGc---- -3'
miRNA:   3'- caUUGCGCGCuGGUGCGC--UCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 162756 0.67 0.964635
Target:  5'- --cGCGUGCG-CCGauaagUGCGAGGUgcUGGa -3'
miRNA:   3'- cauUGCGCGCuGGU-----GCGCUCCAa-ACC- -5'
24389 3' -53.2 NC_005264.1 + 159993 0.67 0.964635
Target:  5'- -cAGCGgGCGACgGCGCGAGc----- -3'
miRNA:   3'- caUUGCgCGCUGgUGCGCUCcaaacc -5'
24389 3' -53.2 NC_005264.1 + 152971 0.67 0.961223
Target:  5'- cGUGGCGCGCcggGACCGCGCccgauaGGGGccgcUUGa -3'
miRNA:   3'- -CAUUGCGCG---CUGGUGCG------CUCCa---AACc -5'
24389 3' -53.2 NC_005264.1 + 115807 0.67 0.961223
Target:  5'- --cACGUGgGACCGCGgGAGGc---- -3'
miRNA:   3'- cauUGCGCgCUGGUGCgCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 120231 0.67 0.961223
Target:  5'- -gGGCGUccGCGGCCAUggcuGCGGGGUUg-- -3'
miRNA:   3'- caUUGCG--CGCUGGUG----CGCUCCAAacc -5'
24389 3' -53.2 NC_005264.1 + 156615 0.67 0.961223
Target:  5'- aGUcuCGCgGCGGCCGCGgCGGGGggucaaaGGa -3'
miRNA:   3'- -CAuuGCG-CGCUGGUGC-GCUCCaaa----CC- -5'
24389 3' -53.2 NC_005264.1 + 83187 0.68 0.93093
Target:  5'- uGUAACagaGUuaACUGCGCGAGGUUUGGc -3'
miRNA:   3'- -CAUUGcg-CGc-UGGUGCGCUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 70582 0.68 0.93093
Target:  5'- cGUGGCGaagaGCGcGCUugGCGAGGcg-GGc -3'
miRNA:   3'- -CAUUGCg---CGC-UGGugCGCUCCaaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.