miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 3' -53.2 NC_005264.1 + 14888 0.68 0.935968
Target:  5'- -aGACGCGCGuCCAUGCuuauGGacgUGGa -3'
miRNA:   3'- caUUGCGCGCuGGUGCGcu--CCaa-ACC- -5'
24389 3' -53.2 NC_005264.1 + 157003 0.68 0.953733
Target:  5'- aUAAC-CGCGGCCAgGCGAG---UGGc -3'
miRNA:   3'- cAUUGcGCGCUGGUgCGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 33385 0.66 0.982818
Target:  5'- gGUAGCGCuuuggcgaugGCGACCGCgGUGAug-UUGGg -3'
miRNA:   3'- -CAUUGCG----------CGCUGGUG-CGCUccaAACC- -5'
24389 3' -53.2 NC_005264.1 + 87366 0.66 0.980783
Target:  5'- -cAACGCGCGAcuggccaccCCAgGCGGacUUUGGg -3'
miRNA:   3'- caUUGCGCGCU---------GGUgCGCUccAAACC- -5'
24389 3' -53.2 NC_005264.1 + 64529 0.66 0.980783
Target:  5'- ---cCGCGCcGCCGCG-GAGGg--GGg -3'
miRNA:   3'- cauuGCGCGcUGGUGCgCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 98219 0.66 0.976179
Target:  5'- -cAACgGCGUcgGGCCGCGCugcggaGAGGUUaUGGg -3'
miRNA:   3'- caUUG-CGCG--CUGGUGCG------CUCCAA-ACC- -5'
24389 3' -53.2 NC_005264.1 + 125515 0.66 0.976179
Target:  5'- ---gUGCGCGGCCAU-CGAGGgccGGu -3'
miRNA:   3'- cauuGCGCGCUGGUGcGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 37564 0.67 0.96783
Target:  5'- -cAGCGCGCcGCCGCG-GAGGg---- -3'
miRNA:   3'- caUUGCGCGcUGGUGCgCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 35473 0.67 0.96783
Target:  5'- cUGACGCgagagugccGCGGCCGauCGCGAcGGcUUGGu -3'
miRNA:   3'- cAUUGCG---------CGCUGGU--GCGCU-CCaAACC- -5'
24389 3' -53.2 NC_005264.1 + 52208 0.66 0.973595
Target:  5'- cGUGGgGCGCGGugGCGCGAGc--UGGu -3'
miRNA:   3'- -CAUUgCGCGCUggUGCGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 78596 0.67 0.96783
Target:  5'- -cAGCGCGUGuCCACGCGguAGGc---- -3'
miRNA:   3'- caUUGCGCGCuGGUGCGC--UCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 162756 0.67 0.964635
Target:  5'- --cGCGUGCG-CCGauaagUGCGAGGUgcUGGa -3'
miRNA:   3'- cauUGCGCGCuGGU-----GCGCUCCAa-ACC- -5'
24389 3' -53.2 NC_005264.1 + 159993 0.67 0.964635
Target:  5'- -cAGCGgGCGACgGCGCGAGc----- -3'
miRNA:   3'- caUUGCgCGCUGgUGCGCUCcaaacc -5'
24389 3' -53.2 NC_005264.1 + 152971 0.67 0.961223
Target:  5'- cGUGGCGCGCcggGACCGCGCccgauaGGGGccgcUUGa -3'
miRNA:   3'- -CAUUGCGCG---CUGGUGCG------CUCCa---AACc -5'
24389 3' -53.2 NC_005264.1 + 120231 0.67 0.961223
Target:  5'- -gGGCGUccGCGGCCAUggcuGCGGGGUUg-- -3'
miRNA:   3'- caUUGCG--CGCUGGUG----CGCUCCAAacc -5'
24389 3' -53.2 NC_005264.1 + 115807 0.67 0.961223
Target:  5'- --cACGUGgGACCGCGgGAGGc---- -3'
miRNA:   3'- cauUGCGCgCUGGUGCgCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 156615 0.67 0.961223
Target:  5'- aGUcuCGCgGCGGCCGCGgCGGGGggucaaaGGa -3'
miRNA:   3'- -CAuuGCG-CGCUGGUGC-GCUCCaaa----CC- -5'
24389 3' -53.2 NC_005264.1 + 48033 0.67 0.957591
Target:  5'- aUGGCGCGUGGCCaAUGCGcauGGagcaUUGGc -3'
miRNA:   3'- cAUUGCGCGCUGG-UGCGCu--CCa---AACC- -5'
24389 3' -53.2 NC_005264.1 + 11053 0.67 0.957591
Target:  5'- -cAAgGCGgGGCCugGCGGGGc---- -3'
miRNA:   3'- caUUgCGCgCUGGugCGCUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 122426 0.66 0.982818
Target:  5'- -gAACGCGgGGUCgguGCGCGGGGgagGGa -3'
miRNA:   3'- caUUGCGCgCUGG---UGCGCUCCaaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.