Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24389 | 3' | -53.2 | NC_005264.1 | + | 35473 | 0.67 | 0.96783 |
Target: 5'- cUGACGCgagagugccGCGGCCGauCGCGAcGGcUUGGu -3' miRNA: 3'- cAUUGCG---------CGCUGGU--GCGCU-CCaAACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 78596 | 0.67 | 0.96783 |
Target: 5'- -cAGCGCGUGuCCACGCGguAGGc---- -3' miRNA: 3'- caUUGCGCGCuGGUGCGC--UCCaaacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 131575 | 0.67 | 0.964635 |
Target: 5'- ---gUGCGCGgcACCugGCGccuAGGUgUGGa -3' miRNA: 3'- cauuGCGCGC--UGGugCGC---UCCAaACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 40966 | 0.67 | 0.964635 |
Target: 5'- -cAGCGgGCGACgGCGCGAGc----- -3' miRNA: 3'- caUUGCgCGCUGgUGCGCUCcaaacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 43730 | 0.67 | 0.964635 |
Target: 5'- --cGCGUGCG-CCGauaagUGCGAGGUgcUGGa -3' miRNA: 3'- cauUGCGCGCuGGU-----GCGCUCCAa-ACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 159993 | 0.67 | 0.964635 |
Target: 5'- -cAGCGgGCGACgGCGCGAGc----- -3' miRNA: 3'- caUUGCgCGCUGgUGCGCUCcaaacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 162756 | 0.67 | 0.964635 |
Target: 5'- --cGCGUGCG-CCGauaagUGCGAGGUgcUGGa -3' miRNA: 3'- cauUGCGCGCuGGU-----GCGCUCCAa-ACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 156615 | 0.67 | 0.961223 |
Target: 5'- aGUcuCGCgGCGGCCGCGgCGGGGggucaaaGGa -3' miRNA: 3'- -CAuuGCG-CGCUGGUGC-GCUCCaaa----CC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 120231 | 0.67 | 0.961223 |
Target: 5'- -gGGCGUccGCGGCCAUggcuGCGGGGUUg-- -3' miRNA: 3'- caUUGCG--CGCUGGUG----CGCUCCAAacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 37588 | 0.67 | 0.961223 |
Target: 5'- aGUcuCGCgGCGGCCGCGgCGGGGggucaaaGGa -3' miRNA: 3'- -CAuuGCG-CGCUGGUGC-GCUCCaaa----CC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 33944 | 0.67 | 0.961223 |
Target: 5'- cGUGGCGCGCcggGACCGCGCccgauaGGGGccgcUUGa -3' miRNA: 3'- -CAUUGCGCG---CUGGUGCG------CUCCa---AACc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 1204 | 0.67 | 0.961223 |
Target: 5'- -gGGCGUccGCGGCCAUggcuGCGGGGUUg-- -3' miRNA: 3'- caUUGCG--CGCUGGUG----CGCUCCAAacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 115807 | 0.67 | 0.961223 |
Target: 5'- --cACGUGgGACCGCGgGAGGc---- -3' miRNA: 3'- cauUGCGCgCUGGUGCgCUCCaaacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 152971 | 0.67 | 0.961223 |
Target: 5'- cGUGGCGCGCcggGACCGCGCccgauaGGGGccgcUUGa -3' miRNA: 3'- -CAUUGCGCG---CUGGUGCG------CUCCa---AACc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 48033 | 0.67 | 0.957591 |
Target: 5'- aUGGCGCGUGGCCaAUGCGcauGGagcaUUGGc -3' miRNA: 3'- cAUUGCGCGCUGG-UGCGCu--CCa---AACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 11053 | 0.67 | 0.957591 |
Target: 5'- -cAAgGCGgGGCCugGCGGGGc---- -3' miRNA: 3'- caUUgCGCgCUGGugCGCUCCaaacc -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 77022 | 0.67 | 0.957591 |
Target: 5'- aGUGACGCGCGugUcgcuaACGCuAGGaagGGu -3' miRNA: 3'- -CAUUGCGCGCugG-----UGCGcUCCaaaCC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 157003 | 0.68 | 0.953733 |
Target: 5'- aUAAC-CGCGGCCAgGCGAG---UGGc -3' miRNA: 3'- cAUUGcGCGCUGGUgCGCUCcaaACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 37976 | 0.68 | 0.953733 |
Target: 5'- aUAAC-CGCGGCCAgGCGAG---UGGc -3' miRNA: 3'- cAUUGcGCGCUGGUgCGCUCcaaACC- -5' |
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24389 | 3' | -53.2 | NC_005264.1 | + | 130555 | 0.68 | 0.945323 |
Target: 5'- -cGGCGCGUGuGCUACGCGcAGGUc--- -3' miRNA: 3'- caUUGCGCGC-UGGUGCGC-UCCAaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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