miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 5' -52.5 NC_005264.1 + 155425 0.71 0.857663
Target:  5'- cACCCGGcgcacGAACC-AAUGGaCGACGGCGc -3'
miRNA:   3'- -UGGGUC-----UUUGGaUUACCgGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 4019 0.71 0.841458
Target:  5'- -aCCAGggGCUUGGcgGGCCGAUG-CAu -3'
miRNA:   3'- ugGGUCuuUGGAUUa-CCGGCUGCuGU- -5'
24389 5' -52.5 NC_005264.1 + 122656 0.72 0.788334
Target:  5'- uACCCAuacACCUAcuuUGGCCuGGCGACAg -3'
miRNA:   3'- -UGGGUcuuUGGAUu--ACCGG-CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 108467 0.72 0.778913
Target:  5'- cGCgCGGGGAUCcGGUGGCCGcGCGACGc -3'
miRNA:   3'- -UGgGUCUUUGGaUUACCGGC-UGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 109383 0.72 0.778913
Target:  5'- gGCCgucGGAACCUGuucuUGGCCGACGuGCAa -3'
miRNA:   3'- -UGGgu-CUUUGGAUu---ACCGGCUGC-UGU- -5'
24389 5' -52.5 NC_005264.1 + 37802 0.73 0.76839
Target:  5'- cCCCGGAGccuccccGCCcgucggGGCCGACGACu -3'
miRNA:   3'- uGGGUCUU-------UGGauua--CCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 13134 0.69 0.929931
Target:  5'- cACCUccgacgaGGAGuuCgUAGUGGUCGACGACGa -3'
miRNA:   3'- -UGGG-------UCUUu-GgAUUACCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 53930 0.68 0.940508
Target:  5'- gGCUCGGGuuCCUcGUcGCUGACGACGa -3'
miRNA:   3'- -UGGGUCUuuGGAuUAcCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 65727 0.68 0.94516
Target:  5'- aGCUCAGAGGCCaacucgcgcUGGCCGuuaACGACc -3'
miRNA:   3'- -UGGGUCUUUGGauu------ACCGGC---UGCUGu -5'
24389 5' -52.5 NC_005264.1 + 54167 0.66 0.983171
Target:  5'- gUgCGGAAACCgcgcccUGGCCgggaGACGACAc -3'
miRNA:   3'- uGgGUCUUUGGauu---ACCGG----CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 80221 0.66 0.981128
Target:  5'- -gUgAGAAGCUUG--GGCCGugGACGg -3'
miRNA:   3'- ugGgUCUUUGGAUuaCCGGCugCUGU- -5'
24389 5' -52.5 NC_005264.1 + 89061 0.66 0.981128
Target:  5'- gACgCCAGGAACUcGGUGGCgGACa--- -3'
miRNA:   3'- -UG-GGUCUUUGGaUUACCGgCUGcugu -5'
24389 5' -52.5 NC_005264.1 + 11879 0.66 0.976494
Target:  5'- aGCUCAGAgccgAGCCgcgagGGCCGugGGa- -3'
miRNA:   3'- -UGGGUCU----UUGGauua-CCGGCugCUgu -5'
24389 5' -52.5 NC_005264.1 + 2367 0.66 0.976494
Target:  5'- aACCCuGgcACCgAGUGGCCGuCGcccGCAg -3'
miRNA:   3'- -UGGGuCuuUGGaUUACCGGCuGC---UGU- -5'
24389 5' -52.5 NC_005264.1 + 46058 0.67 0.973887
Target:  5'- cCCCGGAAGCCauucuGUGGUauaaaagcggGACGGCGg -3'
miRNA:   3'- uGGGUCUUUGGau---UACCGg---------CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 113246 0.67 0.971076
Target:  5'- cCCCGucguCCUGGUcGCCGGCGGCGu -3'
miRNA:   3'- uGGGUcuuuGGAUUAcCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 90654 0.67 0.971076
Target:  5'- cGCgCGGAGACCgcAUuGCUGGCGGCu -3'
miRNA:   3'- -UGgGUCUUUGGauUAcCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 39359 0.67 0.96774
Target:  5'- cGCCCAGAAucgcgcaGCCaGA-GGCCucagacgauGACGACGu -3'
miRNA:   3'- -UGGGUCUU-------UGGaUUaCCGG---------CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 42774 0.67 0.961351
Target:  5'- gACCCGGGuGGCC-AGUuacGGCCGGCGGa- -3'
miRNA:   3'- -UGGGUCU-UUGGaUUA---CCGGCUGCUgu -5'
24389 5' -52.5 NC_005264.1 + 46622 0.68 0.953733
Target:  5'- gUCguGGGACCgcGUGGCCGAagaauuCGGCAu -3'
miRNA:   3'- uGGguCUUUGGauUACCGGCU------GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.