miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 5' -52.5 NC_005264.1 + 76011 0.77 0.5335
Target:  5'- cCCUAGaAGAUCUGAagucGGCCGACGACAg -3'
miRNA:   3'- uGGGUC-UUUGGAUUa---CCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 37177 0.7 0.880357
Target:  5'- uUCCGGAcauguGCCcccgcGUGGCCGugGGCAu -3'
miRNA:   3'- uGGGUCUu----UGGau---UACCGGCugCUGU- -5'
24389 5' -52.5 NC_005264.1 + 39359 0.67 0.96774
Target:  5'- cGCCCAGAAucgcgcaGCCaGA-GGCCucagacgauGACGACGu -3'
miRNA:   3'- -UGGGUCUU-------UGGaUUaCCGG---------CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 122656 0.72 0.788334
Target:  5'- uACCCAuacACCUAcuuUGGCCuGGCGACAg -3'
miRNA:   3'- -UGGGUcuuUGGAUu--ACCGG-CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 119252 0.97 0.037731
Target:  5'- uACCCAaGAACCUAAUGGCCGACGACAc -3'
miRNA:   3'- -UGGGUcUUUGGAUUACCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 37802 0.73 0.76839
Target:  5'- cCCCGGAGccuccccGCCcgucggGGCCGACGACu -3'
miRNA:   3'- uGGGUCUU-------UGGauua--CCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 90654 0.67 0.971076
Target:  5'- cGCgCGGAGACCgcAUuGCUGGCGGCu -3'
miRNA:   3'- -UGgGUCUUUGGauUAcCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 113246 0.67 0.971076
Target:  5'- cCCCGucguCCUGGUcGCCGGCGGCGu -3'
miRNA:   3'- uGGGUcuuuGGAUUAcCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 4269 0.71 0.865449
Target:  5'- cGCgCGGGAACCgcg-GGgCGGCGGCAg -3'
miRNA:   3'- -UGgGUCUUUGGauuaCCgGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 123046 0.71 0.841458
Target:  5'- -aCCAGggGCUUGGcgGGCCGAUG-CAu -3'
miRNA:   3'- ugGGUCuuUGGAUUa-CCGGCUGCuGU- -5'
24389 5' -52.5 NC_005264.1 + 62362 0.66 0.983171
Target:  5'- cUCCAG-GGCCc--UGGCCGccGCGACAg -3'
miRNA:   3'- uGGGUCuUUGGauuACCGGC--UGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 47134 0.68 0.940508
Target:  5'- -gCCGGAuGACUUGGUGGCgaUGAUGGCAg -3'
miRNA:   3'- ugGGUCU-UUGGAUUACCG--GCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 135536 0.68 0.935608
Target:  5'- uGCUCGGGGACCUAG-GGaCCG-CGAUg -3'
miRNA:   3'- -UGGGUCUUUGGAUUaCC-GGCuGCUGu -5'
24389 5' -52.5 NC_005264.1 + 68324 0.69 0.93046
Target:  5'- uGCCCuc---CCacGUGGCCGACGGCu -3'
miRNA:   3'- -UGGGucuuuGGauUACCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 72269 0.67 0.973887
Target:  5'- cGCUgCAGAGGCgUAcUGGCCGGCaACGa -3'
miRNA:   3'- -UGG-GUCUUUGgAUuACCGGCUGcUGU- -5'
24389 5' -52.5 NC_005264.1 + 130905 0.66 0.976494
Target:  5'- aGCUCAGAgccgAGCCgcgagGGCCGugGGa- -3'
miRNA:   3'- -UGGGUCU----UUGGauua-CCGGCugCUgu -5'
24389 5' -52.5 NC_005264.1 + 147552 0.66 0.976494
Target:  5'- uCCCGcGgcGCgaAGUGGCCGcCGACGu -3'
miRNA:   3'- uGGGU-CuuUGgaUUACCGGCuGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 121394 0.66 0.976494
Target:  5'- aACCCuGgcACCgAGUGGCCGuCGcccGCAg -3'
miRNA:   3'- -UGGGuCuuUGGaUUACCGGCuGC---UGU- -5'
24389 5' -52.5 NC_005264.1 + 50239 0.66 0.978905
Target:  5'- uCCCGGuAGCCUGuuugGUGGCCucuGGgGACGc -3'
miRNA:   3'- uGGGUCuUUGGAU----UACCGG---CUgCUGU- -5'
24389 5' -52.5 NC_005264.1 + 30391 0.66 0.983171
Target:  5'- uUCCAGAAagGCCUugacGCCGGCGAg- -3'
miRNA:   3'- uGGGUCUU--UGGAuuacCGGCUGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.