Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24389 | 5' | -52.5 | NC_005264.1 | + | 39359 | 0.67 | 0.96774 |
Target: 5'- cGCCCAGAAucgcgcaGCCaGA-GGCCucagacgauGACGACGu -3' miRNA: 3'- -UGGGUCUU-------UGGaUUaCCGG---------CUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 158386 | 0.67 | 0.96774 |
Target: 5'- cGCCCAGAAucgcgcaGCCaGA-GGCCucagacgauGACGACGu -3' miRNA: 3'- -UGGGUCUU-------UGGaUUaCCGG---------CUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 42774 | 0.67 | 0.961351 |
Target: 5'- gACCCGGGuGGCC-AGUuacGGCCGGCGGa- -3' miRNA: 3'- -UGGGUCU-UUGGaUUA---CCGGCUGCUgu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 161800 | 0.67 | 0.961351 |
Target: 5'- gACCCGGGuGGCC-AGUuacGGCCGGCGGa- -3' miRNA: 3'- -UGGGUCU-UUGGaUUA---CCGGCUGCUgu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 106900 | 0.68 | 0.957659 |
Target: 5'- aGCCgAGAAACUacugccgcGGCUGACGAUAu -3' miRNA: 3'- -UGGgUCUUUGGauua----CCGGCUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 46622 | 0.68 | 0.953733 |
Target: 5'- gUCguGGGACCgcGUGGCCGAagaauuCGGCAu -3' miRNA: 3'- uGGguCUUUGGauUACCGGCU------GCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 94131 | 0.68 | 0.953733 |
Target: 5'- cGCUCAGAAcugGCCUAAUGGaCUG-CGAg- -3' miRNA: 3'- -UGGGUCUU---UGGAUUACC-GGCuGCUgu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 80778 | 0.68 | 0.949568 |
Target: 5'- cGCgCAGAGAUCUGGccUGGCCGuagccauCGAUAc -3' miRNA: 3'- -UGgGUCUUUGGAUU--ACCGGCu------GCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 79892 | 0.68 | 0.948271 |
Target: 5'- gGCUCAG--GCCUGgucuuugcgugcgcGUGGCCGACGuCu -3' miRNA: 3'- -UGGGUCuuUGGAU--------------UACCGGCUGCuGu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 65727 | 0.68 | 0.94516 |
Target: 5'- aGCUCAGAGGCCaacucgcgcUGGCCGuuaACGACc -3' miRNA: 3'- -UGGGUCUUUGGauu------ACCGGC---UGCUGu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 15987 | 0.68 | 0.944706 |
Target: 5'- gACCCGGGgagauuuAGCCgcaucAUGGCaGGCGACGa -3' miRNA: 3'- -UGGGUCU-------UUGGau---UACCGgCUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 47134 | 0.68 | 0.940508 |
Target: 5'- -gCCGGAuGACUUGGUGGCgaUGAUGGCAg -3' miRNA: 3'- ugGGUCU-UUGGAUUACCG--GCUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 99638 | 0.68 | 0.940508 |
Target: 5'- gACCCGGAGACggc--GGCCGugG-CAg -3' miRNA: 3'- -UGGGUCUUUGgauuaCCGGCugCuGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 53930 | 0.68 | 0.940508 |
Target: 5'- gGCUCGGGuuCCUcGUcGCUGACGACGa -3' miRNA: 3'- -UGGGUCUuuGGAuUAcCGGCUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 135536 | 0.68 | 0.935608 |
Target: 5'- uGCUCGGGGACCUAG-GGaCCG-CGAUg -3' miRNA: 3'- -UGGGUCUUUGGAUUaCC-GGCuGCUGu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 68324 | 0.69 | 0.93046 |
Target: 5'- uGCCCuc---CCacGUGGCCGACGGCu -3' miRNA: 3'- -UGGGucuuuGGauUACCGGCUGCUGu -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 13134 | 0.69 | 0.929931 |
Target: 5'- cACCUccgacgaGGAGuuCgUAGUGGUCGACGACGa -3' miRNA: 3'- -UGGG-------UCUUu-GgAUUACCGGCUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 132161 | 0.69 | 0.929931 |
Target: 5'- cACCUccgacgaGGAGuuCgUAGUGGUCGACGACGa -3' miRNA: 3'- -UGGG-------UCUUu-GgAUUACCGGCUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 6586 | 0.69 | 0.925061 |
Target: 5'- cCCCAGggGCCgacaGGUCaACGGCGa -3' miRNA: 3'- uGGGUCuuUGGauuaCCGGcUGCUGU- -5' |
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24389 | 5' | -52.5 | NC_005264.1 | + | 125613 | 0.69 | 0.925061 |
Target: 5'- cCCCAGggGCCgacaGGUCaACGGCGa -3' miRNA: 3'- uGGGUCuuUGGauuaCCGGcUGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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