miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24390 3' -54.3 NC_005264.1 + 15874 0.66 0.961951
Target:  5'- -gAgGCUCcgcAGccuGCGGCCUCaGCGCc -3'
miRNA:   3'- agUgCGAG---UCuauCGCCGGAGaUGCG- -5'
24390 3' -54.3 NC_005264.1 + 155948 0.66 0.961951
Target:  5'- gCGCGCUgGGAcugcGCGGC-UCgcggACGCu -3'
miRNA:   3'- aGUGCGAgUCUau--CGCCGgAGa---UGCG- -5'
24390 3' -54.3 NC_005264.1 + 131419 0.66 0.961951
Target:  5'- gUCGaGCUauaAGAUcucccgccccgaGGCGGCCcgCUACGUg -3'
miRNA:   3'- -AGUgCGAg--UCUA------------UCGCCGGa-GAUGCG- -5'
24390 3' -54.3 NC_005264.1 + 12392 0.66 0.961951
Target:  5'- gUCGaGCUauaAGAUcucccgccccgaGGCGGCCcgCUACGUg -3'
miRNA:   3'- -AGUgCGAg--UCUA------------UCGCCGGa-GAUGCG- -5'
24390 3' -54.3 NC_005264.1 + 110823 0.66 0.958351
Target:  5'- -aGCGUUCGGGUcugAGCGGggucgCUCcGCGCg -3'
miRNA:   3'- agUGCGAGUCUA---UCGCCg----GAGaUGCG- -5'
24390 3' -54.3 NC_005264.1 + 55890 0.66 0.958351
Target:  5'- aCAgGcCUCAGAUccuGCGGCCgc--CGCa -3'
miRNA:   3'- aGUgC-GAGUCUAu--CGCCGGagauGCG- -5'
24390 3' -54.3 NC_005264.1 + 45529 0.66 0.957979
Target:  5'- gCACGCUucucagucgcacgCGGAgAGCGGCaUC-GCGCa -3'
miRNA:   3'- aGUGCGA-------------GUCUaUCGCCGgAGaUGCG- -5'
24390 3' -54.3 NC_005264.1 + 28341 0.66 0.954526
Target:  5'- -gGCGUaCGGGUAGCGGgCgacACGCg -3'
miRNA:   3'- agUGCGaGUCUAUCGCCgGagaUGCG- -5'
24390 3' -54.3 NC_005264.1 + 54209 0.66 0.954526
Target:  5'- aUUGCGCgggggauaCGGAcGGCGGCCggUGCGUu -3'
miRNA:   3'- -AGUGCGa-------GUCUaUCGCCGGagAUGCG- -5'
24390 3' -54.3 NC_005264.1 + 62029 0.66 0.954526
Target:  5'- gUCGCGCUCuagcaAGGUucGGa-GCCUgCUGCGCc -3'
miRNA:   3'- -AGUGCGAG-----UCUA--UCgcCGGA-GAUGCG- -5'
24390 3' -54.3 NC_005264.1 + 47017 0.66 0.950469
Target:  5'- aCAC-CUCAcGGUGgaacGCGGCCUCc-CGCg -3'
miRNA:   3'- aGUGcGAGU-CUAU----CGCCGGAGauGCG- -5'
24390 3' -54.3 NC_005264.1 + 58678 0.66 0.950469
Target:  5'- -gGCGCUgCAGGcgcaccCGGCCUCUAUGa -3'
miRNA:   3'- agUGCGA-GUCUauc---GCCGGAGAUGCg -5'
24390 3' -54.3 NC_005264.1 + 27418 0.66 0.95005
Target:  5'- aUCGCGCUCGGG-GGCaugaugaGGCUUucagccagacCUGCGCc -3'
miRNA:   3'- -AGUGCGAGUCUaUCG-------CCGGA----------GAUGCG- -5'
24390 3' -54.3 NC_005264.1 + 127361 0.66 0.946177
Target:  5'- gUCGCGaUCGGcc-GCGGCaCUCU-CGCg -3'
miRNA:   3'- -AGUGCgAGUCuauCGCCG-GAGAuGCG- -5'
24390 3' -54.3 NC_005264.1 + 108440 0.66 0.946177
Target:  5'- gCGCGUggGGAgauUAGCGGaguugccgcauuCCUCUGCGUc -3'
miRNA:   3'- aGUGCGagUCU---AUCGCC------------GGAGAUGCG- -5'
24390 3' -54.3 NC_005264.1 + 19426 0.66 0.946177
Target:  5'- -gGCGC-CGGGU-GUGGCCgCgggGCGCg -3'
miRNA:   3'- agUGCGaGUCUAuCGCCGGaGa--UGCG- -5'
24390 3' -54.3 NC_005264.1 + 130867 0.67 0.941648
Target:  5'- gCGCGCaUCGGAcacGCGGCCcgUCgcCGCc -3'
miRNA:   3'- aGUGCG-AGUCUau-CGCCGG--AGauGCG- -5'
24390 3' -54.3 NC_005264.1 + 73768 0.67 0.941648
Target:  5'- gCugGCgCAGAgaauagGGUaGGCCUCUugGa -3'
miRNA:   3'- aGugCGaGUCUa-----UCG-CCGGAGAugCg -5'
24390 3' -54.3 NC_005264.1 + 11841 0.67 0.941648
Target:  5'- gCGCGCaUCGGAcacGCGGCCcgUCgcCGCc -3'
miRNA:   3'- aGUGCG-AGUCUau-CGCCGG--AGauGCG- -5'
24390 3' -54.3 NC_005264.1 + 143171 0.67 0.941648
Target:  5'- cCGCGCuuUCAGAUGccacGCGGaagCUAUGCg -3'
miRNA:   3'- aGUGCG--AGUCUAU----CGCCggaGAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.