miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24390 5' -57.6 NC_005264.1 + 58636 0.66 0.853976
Target:  5'- cGACGCGUGcucuGCGGCga-GGUCGAc -3'
miRNA:   3'- cCUGCGUACuc--CGCCGauaCCGGCUu -5'
24390 5' -57.6 NC_005264.1 + 107481 0.66 0.853976
Target:  5'- cGACGCGgcc--CGGCUAUGGCCa-- -3'
miRNA:   3'- cCUGCGUacuccGCCGAUACCGGcuu -5'
24390 5' -57.6 NC_005264.1 + 19394 0.66 0.853976
Target:  5'- gGGGCGCAuuggcgacaugaUGGGGgaggcgaggcgcCGGgUGUGGCCGc- -3'
miRNA:   3'- -CCUGCGU------------ACUCC------------GCCgAUACCGGCuu -5'
24390 5' -57.6 NC_005264.1 + 61368 0.66 0.82978
Target:  5'- uGAUGCuUGGGGCGGUgauUAUGGUgcUGAAc -3'
miRNA:   3'- cCUGCGuACUCCGCCG---AUACCG--GCUU- -5'
24390 5' -57.6 NC_005264.1 + 13620 0.66 0.82135
Target:  5'- gGGACGCGggcaGGGGCGGC---GGUaaCGAAg -3'
miRNA:   3'- -CCUGCGUa---CUCCGCCGauaCCG--GCUU- -5'
24390 5' -57.6 NC_005264.1 + 132647 0.66 0.82135
Target:  5'- gGGACGCGggcaGGGGCGGC---GGUaaCGAAg -3'
miRNA:   3'- -CCUGCGUa---CUCCGCCGauaCCG--GCUU- -5'
24390 5' -57.6 NC_005264.1 + 131987 0.66 0.82135
Target:  5'- cGACagGCcgGuGGCGGUg--GGCCGAc -3'
miRNA:   3'- cCUG--CGuaCuCCGCCGauaCCGGCUu -5'
24390 5' -57.6 NC_005264.1 + 16571 0.67 0.815346
Target:  5'- cGGCGCcgG-GGCGGCggcgcacaugacuccGGCCGAc -3'
miRNA:   3'- cCUGCGuaCuCCGCCGaua------------CCGGCUu -5'
24390 5' -57.6 NC_005264.1 + 119750 0.67 0.803985
Target:  5'- cGGAaucgGCA--AGGCGGCUcUGGUCGGc -3'
miRNA:   3'- -CCUg---CGUacUCCGCCGAuACCGGCUu -5'
24390 5' -57.6 NC_005264.1 + 52203 0.67 0.803985
Target:  5'- aGGGC-CGUGGGGC-GCgGUGGCgCGAGc -3'
miRNA:   3'- -CCUGcGUACUCCGcCGaUACCG-GCUU- -5'
24390 5' -57.6 NC_005264.1 + 149923 0.67 0.795067
Target:  5'- gGGACGCGUcGGGGgaGGaCUGcgaGGCCGGg -3'
miRNA:   3'- -CCUGCGUA-CUCCg-CC-GAUa--CCGGCUu -5'
24390 5' -57.6 NC_005264.1 + 30897 0.67 0.795067
Target:  5'- gGGACGCGUcGGGGgaGGaCUGcgaGGCCGGg -3'
miRNA:   3'- -CCUGCGUA-CUCCg-CC-GAUa--CCGGCUu -5'
24390 5' -57.6 NC_005264.1 + 90650 0.68 0.738812
Target:  5'- aGGGCGCGcgGAgaccgcauugcuGGCGGCUAUGaUCGAGu -3'
miRNA:   3'- -CCUGCGUa-CU------------CCGCCGAUACcGGCUU- -5'
24390 5' -57.6 NC_005264.1 + 116289 0.68 0.738812
Target:  5'- uGGCGCggGcGGCuacGGCUGUGGCCu-- -3'
miRNA:   3'- cCUGCGuaCuCCG---CCGAUACCGGcuu -5'
24390 5' -57.6 NC_005264.1 + 128098 0.68 0.719228
Target:  5'- cGACGCGcUGAGGaCGagcgaugccaGCUggGGCCGAAu -3'
miRNA:   3'- cCUGCGU-ACUCC-GC----------CGAuaCCGGCUU- -5'
24390 5' -57.6 NC_005264.1 + 9071 0.68 0.719228
Target:  5'- cGACGCGcUGAGGaCGagcgaugccaGCUggGGCCGAAu -3'
miRNA:   3'- cCUGCGU-ACUCC-GC----------CGAuaCCGGCUU- -5'
24390 5' -57.6 NC_005264.1 + 30121 0.7 0.628462
Target:  5'- cGGCGCGgcaccGAGcuGCGGCgcauUGGCCGAGa -3'
miRNA:   3'- cCUGCGUa----CUC--CGCCGau--ACCGGCUU- -5'
24390 5' -57.6 NC_005264.1 + 45780 0.7 0.59796
Target:  5'- uGGGCGCcgGA-GCGGCUAUugcggucugGGCCGc- -3'
miRNA:   3'- -CCUGCGuaCUcCGCCGAUA---------CCGGCuu -5'
24390 5' -57.6 NC_005264.1 + 16768 0.71 0.577738
Target:  5'- -cGCGCG-GGGGCGcGCUGUucgGGCCGGAc -3'
miRNA:   3'- ccUGCGUaCUCCGC-CGAUA---CCGGCUU- -5'
24390 5' -57.6 NC_005264.1 + 109351 0.71 0.547707
Target:  5'- cGGCGCAUGGGGCuuCUAUGGUgGGGg -3'
miRNA:   3'- cCUGCGUACUCCGccGAUACCGgCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.