miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24391 5' -52.3 NC_005264.1 + 59724 0.66 0.982588
Target:  5'- cGGCGCGCaUGGCuCGUUaGAagagUCAugGGGCg -3'
miRNA:   3'- uUUGCGUG-ACCGcGCAA-CU----AGU--UCCG- -5'
24391 5' -52.3 NC_005264.1 + 25201 0.66 0.982588
Target:  5'- -cGCGUACguguUGGCGCacacggUGGcCAGGGCa -3'
miRNA:   3'- uuUGCGUG----ACCGCGca----ACUaGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 67995 0.66 0.982588
Target:  5'- uGAAgGCACcGGCucguuGCGggGGUC-GGGCa -3'
miRNA:   3'- -UUUgCGUGaCCG-----CGCaaCUAGuUCCG- -5'
24391 5' -52.3 NC_005264.1 + 3179 0.66 0.982588
Target:  5'- -cGCGuCGCgacGGCGCGggGA--AGGGCu -3'
miRNA:   3'- uuUGC-GUGa--CCGCGCaaCUagUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 122206 0.66 0.982588
Target:  5'- -cGCGuCGCgacGGCGCGggGA--AGGGCu -3'
miRNA:   3'- uuUGC-GUGa--CCGCGCaaCUagUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 157396 0.66 0.981339
Target:  5'- -uGCGCAUgcuguacGGCGCGgcGuugguauuagucguuAUCGGGGCg -3'
miRNA:   3'- uuUGCGUGa------CCGCGCaaC---------------UAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 144819 0.66 0.980469
Target:  5'- -cACGCACuUGGUGuCGgaaacagGGUCGGGGg -3'
miRNA:   3'- uuUGCGUG-ACCGC-GCaa-----CUAGUUCCg -5'
24391 5' -52.3 NC_005264.1 + 24148 0.66 0.980469
Target:  5'- uAGACGCAaaguaUGGCGa----GUCGAGGCu -3'
miRNA:   3'- -UUUGCGUg----ACCGCgcaacUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 25359 0.66 0.978164
Target:  5'- uGAACGCGa--GCGUG-UGGUCGAGGa -3'
miRNA:   3'- -UUUGCGUgacCGCGCaACUAGUUCCg -5'
24391 5' -52.3 NC_005264.1 + 54417 0.66 0.975663
Target:  5'- --uUGCGC-GGCGCGccGAcUAGGGCg -3'
miRNA:   3'- uuuGCGUGaCCGCGCaaCUaGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 16767 0.66 0.975663
Target:  5'- --cCGCGCgggGGCGCGcUGuUC-GGGCc -3'
miRNA:   3'- uuuGCGUGa--CCGCGCaACuAGuUCCG- -5'
24391 5' -52.3 NC_005264.1 + 21884 0.66 0.975663
Target:  5'- aAAAgGCcgaGCUGGCGCGUaaUGG-C-AGGCu -3'
miRNA:   3'- -UUUgCG---UGACCGCGCA--ACUaGuUCCG- -5'
24391 5' -52.3 NC_005264.1 + 20150 0.66 0.975663
Target:  5'- uGGCGCGCcgccGGCGCccaaGAUCGcGGCa -3'
miRNA:   3'- uUUGCGUGa---CCGCGcaa-CUAGUuCCG- -5'
24391 5' -52.3 NC_005264.1 + 132214 0.66 0.974873
Target:  5'- -uACGCGCUGcGCGCGgauccGUCGccgccgccgucgccGGGCu -3'
miRNA:   3'- uuUGCGUGAC-CGCGCaac--UAGU--------------UCCG- -5'
24391 5' -52.3 NC_005264.1 + 13187 0.66 0.974873
Target:  5'- -uACGCGCUGcGCGCGgauccGUCGccgccgccgucgccGGGCu -3'
miRNA:   3'- uuUGCGUGAC-CGCGCaac--UAGU--------------UCCG- -5'
24391 5' -52.3 NC_005264.1 + 84319 0.66 0.972959
Target:  5'- aAGACGCcaGC-GGCGCGUacccagcgcggUGccaacaccGUCGAGGCg -3'
miRNA:   3'- -UUUGCG--UGaCCGCGCA-----------AC--------UAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 146817 0.66 0.972959
Target:  5'- cGACuGCACggaGGCGCGgcGGUCGucGCc -3'
miRNA:   3'- uUUG-CGUGa--CCGCGCaaCUAGUucCG- -5'
24391 5' -52.3 NC_005264.1 + 36976 0.66 0.972959
Target:  5'- -uGCGCGCUGGCGCcauaGUCGccGCc -3'
miRNA:   3'- uuUGCGUGACCGCGcaacUAGUucCG- -5'
24391 5' -52.3 NC_005264.1 + 67716 0.66 0.972959
Target:  5'- uGAACGC-UUGGUGgGgcGGcuUCGGGGCa -3'
miRNA:   3'- -UUUGCGuGACCGCgCaaCU--AGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 156003 0.66 0.972959
Target:  5'- -uGCGCGCUGGCGCcauaGUCGccGCc -3'
miRNA:   3'- uuUGCGUGACCGCGcaacUAGUucCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.