miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24391 5' -52.3 NC_005264.1 + 118577 1.11 0.00469
Target:  5'- cAAACGCACUGGCGCGUUGAUCAAGGCa -3'
miRNA:   3'- -UUUGCGUGACCGCGCAACUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 148494 0.81 0.325804
Target:  5'- gGGACGCGCUGGuCGCGUUGGcggCGAGcGCc -3'
miRNA:   3'- -UUUGCGUGACC-GCGCAACUa--GUUC-CG- -5'
24391 5' -52.3 NC_005264.1 + 83256 0.76 0.565151
Target:  5'- uGAUGCGCUGGCGCGgcGAacuUCAAuuucGGCc -3'
miRNA:   3'- uUUGCGUGACCGCGCaaCU---AGUU----CCG- -5'
24391 5' -52.3 NC_005264.1 + 68129 0.73 0.722514
Target:  5'- aAAACGCAUgGGCGcCGUUGAcCAcGGCc -3'
miRNA:   3'- -UUUGCGUGaCCGC-GCAACUaGUuCCG- -5'
24391 5' -52.3 NC_005264.1 + 162692 0.72 0.772421
Target:  5'- cGGCGCGCUGcGCGCcggcGUUAAGGCg -3'
miRNA:   3'- uUUGCGUGAC-CGCGcaacUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 43666 0.72 0.772421
Target:  5'- cGGCGCGCUGcGCGCcggcGUUAAGGCg -3'
miRNA:   3'- uUUGCGUGAC-CGCGcaacUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 127287 0.72 0.781085
Target:  5'- ----uCGCUGGCGUGUUGGUucaggaacgccaaCAAGGCg -3'
miRNA:   3'- uuugcGUGACCGCGCAACUA-------------GUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 8260 0.72 0.781085
Target:  5'- ----uCGCUGGCGUGUUGGUucaggaacgccaaCAAGGCg -3'
miRNA:   3'- uuugcGUGACCGCGCAACUA-------------GUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 19394 0.72 0.791518
Target:  5'- gGGGCGCAUUGGCGacaugaugGggGAggCGAGGCg -3'
miRNA:   3'- -UUUGCGUGACCGCg-------CaaCUa-GUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 76360 0.72 0.800841
Target:  5'- -uGCGCGCaGGCGCGUUGGUacccGCu -3'
miRNA:   3'- uuUGCGUGaCCGCGCAACUAguucCG- -5'
24391 5' -52.3 NC_005264.1 + 82349 0.71 0.843161
Target:  5'- uAGACGCACgugugccaggcaGGCGCGUcGAUCcggugccGGGCg -3'
miRNA:   3'- -UUUGCGUGa-----------CCGCGCAaCUAGu------UCCG- -5'
24391 5' -52.3 NC_005264.1 + 126247 0.71 0.845659
Target:  5'- aAGGCGUAUcuuuauaccauccugGGCGUGUUGGUCcgcgGAGGCg -3'
miRNA:   3'- -UUUGCGUGa--------------CCGCGCAACUAG----UUCCG- -5'
24391 5' -52.3 NC_005264.1 + 16485 0.7 0.861036
Target:  5'- --cCGCGgUGGCcuGCGg-GGUCGAGGCa -3'
miRNA:   3'- uuuGCGUgACCG--CGCaaCUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 48348 0.7 0.868813
Target:  5'- uGGCGCACgccaUGGCGgccuCGUUGcgcagugccgcGUCGAGGCg -3'
miRNA:   3'- uUUGCGUG----ACCGC----GCAAC-----------UAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 155557 0.7 0.874121
Target:  5'- -uACGCACUGGCGgGgcucuccgucgcCAAGGCu -3'
miRNA:   3'- uuUGCGUGACCGCgCaacua-------GUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 116435 0.7 0.876362
Target:  5'- gGGGCGU-CUGGcCGCGggggcgacGAUCGGGGCg -3'
miRNA:   3'- -UUUGCGuGACC-GCGCaa------CUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 69152 0.69 0.89759
Target:  5'- -cGCGCuACUGccacgguaaGCGCGgUGAUCAuGGCa -3'
miRNA:   3'- uuUGCG-UGAC---------CGCGCaACUAGUuCCG- -5'
24391 5' -52.3 NC_005264.1 + 91548 0.69 0.904178
Target:  5'- -cGCGCAUaucgGGCGCGgcGGggggcaCGAGGCu -3'
miRNA:   3'- uuUGCGUGa---CCGCGCaaCUa-----GUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 145323 0.69 0.916602
Target:  5'- cGACGCACUuaucuaucGCGCG---GUCGAGGCa -3'
miRNA:   3'- uUUGCGUGAc-------CGCGCaacUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 50871 0.69 0.922433
Target:  5'- uGACGCGaacaGGCGCGUccAUCcGGGCg -3'
miRNA:   3'- uUUGCGUga--CCGCGCAacUAGuUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.