Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24391 | 5' | -52.3 | NC_005264.1 | + | 74240 | 0.69 | 0.924694 |
Target: 5'- uAGCGCGCUGGCcgcgcuccagacacgGCGguaGAggCGGGGCc -3' miRNA: 3'- uUUGCGUGACCG---------------CGCaa-CUa-GUUCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 153372 | 0.68 | 0.933329 |
Target: 5'- aAGACGCGCgaa-GCGUUGcgCGAGGg -3' miRNA: 3'- -UUUGCGUGaccgCGCAACuaGUUCCg -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 21619 | 0.68 | 0.947766 |
Target: 5'- uGACGCuccaaucaACUGGCGUaGUUGuuUCAGGGg -3' miRNA: 3'- uUUGCG--------UGACCGCG-CAACu-AGUUCCg -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 69810 | 0.68 | 0.948208 |
Target: 5'- -cACGCAUUcGGCGCGgacgacgccgccggGGUgAAGGCc -3' miRNA: 3'- uuUGCGUGA-CCGCGCaa------------CUAgUUCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 81053 | 0.68 | 0.952077 |
Target: 5'- --cCuCACUGGCGCGUgguuuAUCGAcGGCa -3' miRNA: 3'- uuuGcGUGACCGCGCAac---UAGUU-CCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 70639 | 0.67 | 0.956143 |
Target: 5'- -cGCGCGCaGGCGCGUcaacaacaccgUGGcCGcGGCg -3' miRNA: 3'- uuUGCGUGaCCGCGCA-----------ACUaGUuCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 138327 | 0.67 | 0.956143 |
Target: 5'- uGugGUcaUGGCGCGUgcgcGA-CAAGGCg -3' miRNA: 3'- uUugCGugACCGCGCAa---CUaGUUCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 34078 | 0.67 | 0.963555 |
Target: 5'- -cGCGCACUGGCGCG------AAGGa -3' miRNA: 3'- uuUGCGUGACCGCGCaacuagUUCCg -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 89489 | 0.67 | 0.963555 |
Target: 5'- aAGGCGCGCUGGCGauaaaacccauCGUgcaGAgagCGgcAGGCg -3' miRNA: 3'- -UUUGCGUGACCGC-----------GCAa--CUa--GU--UCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 2886 | 0.67 | 0.963555 |
Target: 5'- cGGgGCGC-GGCGCGgcGGggAGGGCg -3' miRNA: 3'- uUUgCGUGaCCGCGCaaCUagUUCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 121912 | 0.67 | 0.963555 |
Target: 5'- cGGgGCGC-GGCGCGgcGGggAGGGCg -3' miRNA: 3'- uUUgCGUGaCCGCGCaaCUagUUCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 95398 | 0.67 | 0.966912 |
Target: 5'- --cCGCGCUGGUGCaGggGcuUCAgauAGGCg -3' miRNA: 3'- uuuGCGUGACCGCG-CaaCu-AGU---UCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 16399 | 0.67 | 0.970045 |
Target: 5'- uGGCGCAUUGGCacuCGggGAggCAAGGg -3' miRNA: 3'- uUUGCGUGACCGc--GCaaCUa-GUUCCg -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 35787 | 0.67 | 0.970045 |
Target: 5'- aGGGCGCGgUGGCGCc---GUCGuGGCg -3' miRNA: 3'- -UUUGCGUgACCGCGcaacUAGUuCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 92076 | 0.67 | 0.970045 |
Target: 5'- -uACGCACgaggGGCGgGUc-AUgGAGGCg -3' miRNA: 3'- uuUGCGUGa---CCGCgCAacUAgUUCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 147021 | 0.67 | 0.970045 |
Target: 5'- cGAGCGCGaacGGCGuCGUUcGUCGucGGGCu -3' miRNA: 3'- -UUUGCGUga-CCGC-GCAAcUAGU--UCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 154813 | 0.67 | 0.970045 |
Target: 5'- aGGGCGCGgUGGCGCc---GUCGuGGCg -3' miRNA: 3'- -UUUGCGUgACCGCGcaacUAGUuCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 58767 | 0.67 | 0.970045 |
Target: 5'- gAGGCGCAC--GCGCGgUGGUCGGcGCa -3' miRNA: 3'- -UUUGCGUGacCGCGCaACUAGUUcCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 60403 | 0.67 | 0.970045 |
Target: 5'- gGAACGUaAUUGGgugccCGUGUUGccgGUCGAGGCu -3' miRNA: 3'- -UUUGCG-UGACC-----GCGCAAC---UAGUUCCG- -5' |
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24391 | 5' | -52.3 | NC_005264.1 | + | 24411 | 0.67 | 0.971236 |
Target: 5'- uAAGCGCGC-GGCGCGUUaaacacgcccgcccgGAUU--GGCu -3' miRNA: 3'- -UUUGCGUGaCCGCGCAA---------------CUAGuuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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