miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24391 5' -52.3 NC_005264.1 + 2886 0.67 0.963555
Target:  5'- cGGgGCGC-GGCGCGgcGGggAGGGCg -3'
miRNA:   3'- uUUgCGUGaCCGCGCaaCUagUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 3179 0.66 0.982588
Target:  5'- -cGCGuCGCgacGGCGCGggGA--AGGGCu -3'
miRNA:   3'- uuUGC-GUGa--CCGCGCaaCUagUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 8260 0.72 0.781085
Target:  5'- ----uCGCUGGCGUGUUGGUucaggaacgccaaCAAGGCg -3'
miRNA:   3'- uuugcGUGACCGCGCAACUA-------------GUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 13187 0.66 0.974873
Target:  5'- -uACGCGCUGcGCGCGgauccGUCGccgccgccgucgccGGGCu -3'
miRNA:   3'- uuUGCGUGAC-CGCGCaac--UAGU--------------UCCG- -5'
24391 5' -52.3 NC_005264.1 + 16399 0.67 0.970045
Target:  5'- uGGCGCAUUGGCacuCGggGAggCAAGGg -3'
miRNA:   3'- uUUGCGUGACCGc--GCaaCUa-GUUCCg -5'
24391 5' -52.3 NC_005264.1 + 16485 0.7 0.861036
Target:  5'- --cCGCGgUGGCcuGCGg-GGUCGAGGCa -3'
miRNA:   3'- uuuGCGUgACCG--CGCaaCUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 16767 0.66 0.975663
Target:  5'- --cCGCGCgggGGCGCGcUGuUC-GGGCc -3'
miRNA:   3'- uuuGCGUGa--CCGCGCaACuAGuUCCG- -5'
24391 5' -52.3 NC_005264.1 + 19394 0.72 0.791518
Target:  5'- gGGGCGCAUUGGCGacaugaugGggGAggCGAGGCg -3'
miRNA:   3'- -UUUGCGUGACCGCg-------CaaCUa-GUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 20150 0.66 0.975663
Target:  5'- uGGCGCGCcgccGGCGCccaaGAUCGcGGCa -3'
miRNA:   3'- uUUGCGUGa---CCGCGcaa-CUAGUuCCG- -5'
24391 5' -52.3 NC_005264.1 + 21619 0.68 0.947766
Target:  5'- uGACGCuccaaucaACUGGCGUaGUUGuuUCAGGGg -3'
miRNA:   3'- uUUGCG--------UGACCGCG-CAACu-AGUUCCg -5'
24391 5' -52.3 NC_005264.1 + 21884 0.66 0.975663
Target:  5'- aAAAgGCcgaGCUGGCGCGUaaUGG-C-AGGCu -3'
miRNA:   3'- -UUUgCG---UGACCGCGCA--ACUaGuUCCG- -5'
24391 5' -52.3 NC_005264.1 + 24148 0.66 0.980469
Target:  5'- uAGACGCAaaguaUGGCGa----GUCGAGGCu -3'
miRNA:   3'- -UUUGCGUg----ACCGCgcaacUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 24411 0.67 0.971236
Target:  5'- uAAGCGCGC-GGCGCGUUaaacacgcccgcccgGAUU--GGCu -3'
miRNA:   3'- -UUUGCGUGaCCGCGCAA---------------CUAGuuCCG- -5'
24391 5' -52.3 NC_005264.1 + 25201 0.66 0.982588
Target:  5'- -cGCGUACguguUGGCGCacacggUGGcCAGGGCa -3'
miRNA:   3'- uuUGCGUG----ACCGCGca----ACUaGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 25359 0.66 0.978164
Target:  5'- uGAACGCGa--GCGUG-UGGUCGAGGa -3'
miRNA:   3'- -UUUGCGUgacCGCGCaACUAGUUCCg -5'
24391 5' -52.3 NC_005264.1 + 34078 0.67 0.963555
Target:  5'- -cGCGCACUGGCGCG------AAGGa -3'
miRNA:   3'- uuUGCGUGACCGCGCaacuagUUCCg -5'
24391 5' -52.3 NC_005264.1 + 35787 0.67 0.970045
Target:  5'- aGGGCGCGgUGGCGCc---GUCGuGGCg -3'
miRNA:   3'- -UUUGCGUgACCGCGcaacUAGUuCCG- -5'
24391 5' -52.3 NC_005264.1 + 36976 0.66 0.972959
Target:  5'- -uGCGCGCUGGCGCcauaGUCGccGCc -3'
miRNA:   3'- uuUGCGUGACCGCGcaacUAGUucCG- -5'
24391 5' -52.3 NC_005264.1 + 43666 0.72 0.772421
Target:  5'- cGGCGCGCUGcGCGCcggcGUUAAGGCg -3'
miRNA:   3'- uUUGCGUGAC-CGCGcaacUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 48348 0.7 0.868813
Target:  5'- uGGCGCACgccaUGGCGgccuCGUUGcgcagugccgcGUCGAGGCg -3'
miRNA:   3'- uUUGCGUG----ACCGC----GCAAC-----------UAGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.