miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24391 5' -52.3 NC_005264.1 + 156003 0.66 0.972959
Target:  5'- -uGCGCGCUGGCGCcauaGUCGccGCc -3'
miRNA:   3'- uuUGCGUGACCGCGcaacUAGUucCG- -5'
24391 5' -52.3 NC_005264.1 + 89489 0.67 0.963555
Target:  5'- aAGGCGCGCUGGCGauaaaacccauCGUgcaGAgagCGgcAGGCg -3'
miRNA:   3'- -UUUGCGUGACCGC-----------GCAa--CUa--GU--UCCG- -5'
24391 5' -52.3 NC_005264.1 + 121912 0.67 0.963555
Target:  5'- cGGgGCGC-GGCGCGgcGGggAGGGCg -3'
miRNA:   3'- uUUgCGUGaCCGCGCaaCUagUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 16399 0.67 0.970045
Target:  5'- uGGCGCAUUGGCacuCGggGAggCAAGGg -3'
miRNA:   3'- uUUGCGUGACCGc--GCaaCUa-GUUCCg -5'
24391 5' -52.3 NC_005264.1 + 92076 0.67 0.970045
Target:  5'- -uACGCACgaggGGCGgGUc-AUgGAGGCg -3'
miRNA:   3'- uuUGCGUGa---CCGCgCAacUAgUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 58767 0.67 0.970045
Target:  5'- gAGGCGCAC--GCGCGgUGGUCGGcGCa -3'
miRNA:   3'- -UUUGCGUGacCGCGCaACUAGUUcCG- -5'
24391 5' -52.3 NC_005264.1 + 154813 0.67 0.970045
Target:  5'- aGGGCGCGgUGGCGCc---GUCGuGGCg -3'
miRNA:   3'- -UUUGCGUgACCGCGcaacUAGUuCCG- -5'
24391 5' -52.3 NC_005264.1 + 147021 0.67 0.970045
Target:  5'- cGAGCGCGaacGGCGuCGUUcGUCGucGGGCu -3'
miRNA:   3'- -UUUGCGUga-CCGC-GCAAcUAGU--UCCG- -5'
24391 5' -52.3 NC_005264.1 + 24411 0.67 0.971236
Target:  5'- uAAGCGCGC-GGCGCGUUaaacacgcccgcccgGAUU--GGCu -3'
miRNA:   3'- -UUUGCGUGaCCGCGCAA---------------CUAGuuCCG- -5'
24391 5' -52.3 NC_005264.1 + 34078 0.67 0.963555
Target:  5'- -cGCGCACUGGCGCG------AAGGa -3'
miRNA:   3'- uuUGCGUGACCGCGCaacuagUUCCg -5'
24391 5' -52.3 NC_005264.1 + 70639 0.67 0.956143
Target:  5'- -cGCGCGCaGGCGCGUcaacaacaccgUGGcCGcGGCg -3'
miRNA:   3'- uuUGCGUGaCCGCGCA-----------ACUaGUuCCG- -5'
24391 5' -52.3 NC_005264.1 + 81053 0.68 0.952077
Target:  5'- --cCuCACUGGCGCGUgguuuAUCGAcGGCa -3'
miRNA:   3'- uuuGcGUGACCGCGCAac---UAGUU-CCG- -5'
24391 5' -52.3 NC_005264.1 + 162692 0.72 0.772421
Target:  5'- cGGCGCGCUGcGCGCcggcGUUAAGGCg -3'
miRNA:   3'- uUUGCGUGAC-CGCGcaacUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 127287 0.72 0.781085
Target:  5'- ----uCGCUGGCGUGUUGGUucaggaacgccaaCAAGGCg -3'
miRNA:   3'- uuugcGUGACCGCGCAACUA-------------GUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 19394 0.72 0.791518
Target:  5'- gGGGCGCAUUGGCGacaugaugGggGAggCGAGGCg -3'
miRNA:   3'- -UUUGCGUGACCGCg-------CaaCUa-GUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 76360 0.72 0.800841
Target:  5'- -uGCGCGCaGGCGCGUUGGUacccGCu -3'
miRNA:   3'- uuUGCGUGaCCGCGCAACUAguucCG- -5'
24391 5' -52.3 NC_005264.1 + 48348 0.7 0.868813
Target:  5'- uGGCGCACgccaUGGCGgccuCGUUGcgcagugccgcGUCGAGGCg -3'
miRNA:   3'- uUUGCGUG----ACCGC----GCAAC-----------UAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 116435 0.7 0.876362
Target:  5'- gGGGCGU-CUGGcCGCGggggcgacGAUCGGGGCg -3'
miRNA:   3'- -UUUGCGuGACC-GCGCaa------CUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 145323 0.69 0.916602
Target:  5'- cGACGCACUuaucuaucGCGCG---GUCGAGGCa -3'
miRNA:   3'- uUUGCGUGAc-------CGCGCaacUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 69810 0.68 0.948208
Target:  5'- -cACGCAUUcGGCGCGgacgacgccgccggGGUgAAGGCc -3'
miRNA:   3'- uuUGCGUGA-CCGCGCaa------------CUAgUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.