miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24391 5' -52.3 NC_005264.1 + 3179 0.66 0.982588
Target:  5'- -cGCGuCGCgacGGCGCGggGA--AGGGCu -3'
miRNA:   3'- uuUGC-GUGa--CCGCGCaaCUagUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 21619 0.68 0.947766
Target:  5'- uGACGCuccaaucaACUGGCGUaGUUGuuUCAGGGg -3'
miRNA:   3'- uUUGCG--------UGACCGCG-CAACu-AGUUCCg -5'
24391 5' -52.3 NC_005264.1 + 74240 0.69 0.924694
Target:  5'- uAGCGCGCUGGCcgcgcuccagacacgGCGguaGAggCGGGGCc -3'
miRNA:   3'- uUUGCGUGACCG---------------CGCaa-CUa-GUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 118577 1.11 0.00469
Target:  5'- cAAACGCACUGGCGCGUUGAUCAAGGCa -3'
miRNA:   3'- -UUUGCGUGACCGCGCAACUAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 157396 0.66 0.981339
Target:  5'- -uGCGCAUgcuguacGGCGCGgcGuugguauuagucguuAUCGGGGCg -3'
miRNA:   3'- uuUGCGUGa------CCGCGCaaC---------------UAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 144819 0.66 0.980469
Target:  5'- -cACGCACuUGGUGuCGgaaacagGGUCGGGGg -3'
miRNA:   3'- uuUGCGUG-ACCGC-GCaa-----CUAGUUCCg -5'
24391 5' -52.3 NC_005264.1 + 20150 0.66 0.975663
Target:  5'- uGGCGCGCcgccGGCGCccaaGAUCGcGGCa -3'
miRNA:   3'- uUUGCGUGa---CCGCGcaa-CUAGUuCCG- -5'
24391 5' -52.3 NC_005264.1 + 13187 0.66 0.974873
Target:  5'- -uACGCGCUGcGCGCGgauccGUCGccgccgccgucgccGGGCu -3'
miRNA:   3'- uuUGCGUGAC-CGCGCaac--UAGU--------------UCCG- -5'
24391 5' -52.3 NC_005264.1 + 36976 0.66 0.972959
Target:  5'- -uGCGCGCUGGCGCcauaGUCGccGCc -3'
miRNA:   3'- uuUGCGUGACCGCGcaacUAGUucCG- -5'
24391 5' -52.3 NC_005264.1 + 138327 0.67 0.956143
Target:  5'- uGugGUcaUGGCGCGUgcgcGA-CAAGGCg -3'
miRNA:   3'- uUugCGugACCGCGCAa---CUaGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 35787 0.67 0.970045
Target:  5'- aGGGCGCGgUGGCGCc---GUCGuGGCg -3'
miRNA:   3'- -UUUGCGUgACCGCGcaacUAGUuCCG- -5'
24391 5' -52.3 NC_005264.1 + 84319 0.66 0.972959
Target:  5'- aAGACGCcaGC-GGCGCGUacccagcgcggUGccaacaccGUCGAGGCg -3'
miRNA:   3'- -UUUGCG--UGaCCGCGCA-----------AC--------UAGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 67995 0.66 0.982588
Target:  5'- uGAAgGCACcGGCucguuGCGggGGUC-GGGCa -3'
miRNA:   3'- -UUUgCGUGaCCG-----CGCaaCUAGuUCCG- -5'
24391 5' -52.3 NC_005264.1 + 95398 0.67 0.966912
Target:  5'- --cCGCGCUGGUGCaGggGcuUCAgauAGGCg -3'
miRNA:   3'- uuuGCGUGACCGCG-CaaCu-AGU---UCCG- -5'
24391 5' -52.3 NC_005264.1 + 25201 0.66 0.982588
Target:  5'- -cGCGUACguguUGGCGCacacggUGGcCAGGGCa -3'
miRNA:   3'- uuUGCGUG----ACCGCGca----ACUaGUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 146817 0.66 0.972959
Target:  5'- cGACuGCACggaGGCGCGgcGGUCGucGCc -3'
miRNA:   3'- uUUG-CGUGa--CCGCGCaaCUAGUucCG- -5'
24391 5' -52.3 NC_005264.1 + 2886 0.67 0.963555
Target:  5'- cGGgGCGC-GGCGCGgcGGggAGGGCg -3'
miRNA:   3'- uUUgCGUGaCCGCGCaaCUagUUCCG- -5'
24391 5' -52.3 NC_005264.1 + 153372 0.68 0.933329
Target:  5'- aAGACGCGCgaa-GCGUUGcgCGAGGg -3'
miRNA:   3'- -UUUGCGUGaccgCGCAACuaGUUCCg -5'
24391 5' -52.3 NC_005264.1 + 59724 0.66 0.982588
Target:  5'- cGGCGCGCaUGGCuCGUUaGAagagUCAugGGGCg -3'
miRNA:   3'- uUUGCGUG-ACCGcGCAA-CU----AGU--UCCG- -5'
24391 5' -52.3 NC_005264.1 + 25359 0.66 0.978164
Target:  5'- uGAACGCGa--GCGUG-UGGUCGAGGa -3'
miRNA:   3'- -UUUGCGUgacCGCGCaACUAGUUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.