miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24392 3' -58.1 NC_005264.1 + 159078 0.66 0.79981
Target:  5'- cCAAGGGCCCgcAGCGCcccGGC-GGCa -3'
miRNA:   3'- uGUUCCUGGGa-UCGCGuc-UCGaCCGc -5'
24392 3' -58.1 NC_005264.1 + 40051 0.66 0.79981
Target:  5'- cCAAGGGCCCgcAGCGCcccGGC-GGCa -3'
miRNA:   3'- uGUUCCUGGGa-UCGCGuc-UCGaCCGc -5'
24392 3' -58.1 NC_005264.1 + 26163 0.66 0.79892
Target:  5'- gGCGAGGACUUUcgcGGCacugucgGCGGGGCcguUGGCGc -3'
miRNA:   3'- -UGUUCCUGGGA---UCG-------CGUCUCG---ACCGC- -5'
24392 3' -58.1 NC_005264.1 + 94586 0.66 0.790842
Target:  5'- aGCAgcAGGccGCCCgcGGCGCGGgcauGGCUuGGCGg -3'
miRNA:   3'- -UGU--UCC--UGGGa-UCGCGUC----UCGA-CCGC- -5'
24392 3' -58.1 NC_005264.1 + 57122 0.66 0.790842
Target:  5'- gUAAGGAaaaaCCUgGGCGCGGAcguagGCUGGUc -3'
miRNA:   3'- uGUUCCUg---GGA-UCGCGUCU-----CGACCGc -5'
24392 3' -58.1 NC_005264.1 + 29476 0.67 0.781734
Target:  5'- -gGGGGGCggugcAGCGCAGGGCUaGGCa -3'
miRNA:   3'- ugUUCCUGgga--UCGCGUCUCGA-CCGc -5'
24392 3' -58.1 NC_005264.1 + 116406 0.67 0.772492
Target:  5'- cGCAGGccGACgUcgAGCGCAGGGC-GGCGu -3'
miRNA:   3'- -UGUUC--CUGgGa-UCGCGUCUCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 73820 0.67 0.763128
Target:  5'- gGCGAGuGCCCcgacauGCGC-GAGCUGcGCGa -3'
miRNA:   3'- -UGUUCcUGGGau----CGCGuCUCGAC-CGC- -5'
24392 3' -58.1 NC_005264.1 + 80397 0.67 0.759349
Target:  5'- aACGAGGcCCCcccaagcgacgaaaUGGCGCuuaucgaAGAGUUGGCc -3'
miRNA:   3'- -UGUUCCuGGG--------------AUCGCG-------UCUCGACCGc -5'
24392 3' -58.1 NC_005264.1 + 154590 0.67 0.753649
Target:  5'- cCAGGGcGCCgCUGGC-CAGAcuaaccgcGCUGGCGu -3'
miRNA:   3'- uGUUCC-UGG-GAUCGcGUCU--------CGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 162248 0.67 0.744064
Target:  5'- -gGGGGGCUac-G-GCGGGGCUGGCGg -3'
miRNA:   3'- ugUUCCUGGgauCgCGUCUCGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 43221 0.67 0.744064
Target:  5'- -gGGGGGCUac-G-GCGGGGCUGGCGg -3'
miRNA:   3'- ugUUCCUGGgauCgCGUCUCGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 157363 0.68 0.714766
Target:  5'- ---cGGGCCCUGGCcgugauGCuGGGCggcggGGCGg -3'
miRNA:   3'- uguuCCUGGGAUCG------CGuCUCGa----CCGC- -5'
24392 3' -58.1 NC_005264.1 + 38336 0.68 0.714766
Target:  5'- ---cGGGCCCUGGCcgugauGCuGGGCggcggGGCGg -3'
miRNA:   3'- uguuCCUGGGAUCG------CGuCUCGa----CCGC- -5'
24392 3' -58.1 NC_005264.1 + 45756 0.68 0.694872
Target:  5'- uGCcauAGGACCCcuGCGCGGGGC-GcGCGg -3'
miRNA:   3'- -UGu--UCCUGGGauCGCGUCUCGaC-CGC- -5'
24392 3' -58.1 NC_005264.1 + 145994 0.68 0.694872
Target:  5'- aACGAGGGCCuCUAcggcguGCGCGuuauGGGCUcgGGCGa -3'
miRNA:   3'- -UGUUCCUGG-GAU------CGCGU----CUCGA--CCGC- -5'
24392 3' -58.1 NC_005264.1 + 55123 0.68 0.684843
Target:  5'- cACGAGGGuucgacacCCCgccguGCGCuGuGCUGGCGc -3'
miRNA:   3'- -UGUUCCU--------GGGau---CGCGuCuCGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 52201 0.69 0.673762
Target:  5'- -uGAGGGCCgUggGGCGCGguggcgcGAGCUGGUa -3'
miRNA:   3'- ugUUCCUGGgA--UCGCGU-------CUCGACCGc -5'
24392 3' -58.1 NC_005264.1 + 84055 0.69 0.661627
Target:  5'- uCGAGGAauaaccacaccgccCCCUGGCucauGCGGAGCagcgGGCGc -3'
miRNA:   3'- uGUUCCU--------------GGGAUCG----CGUCUCGa---CCGC- -5'
24392 3' -58.1 NC_005264.1 + 98097 0.69 0.654533
Target:  5'- uCAGGGcgAUCCUuGCGCGGGGCacGGCGc -3'
miRNA:   3'- uGUUCC--UGGGAuCGCGUCUCGa-CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.