miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24392 5' -55.5 NC_005264.1 + 121413 0.66 0.929991
Target:  5'- cGUCGCCcgcaggAGCCCGGC-GCCGGccuGCCUa -3'
miRNA:   3'- -CAGCGG------UUGGGCUGgUGGUUcu-UGGA- -5'
24392 5' -55.5 NC_005264.1 + 104579 0.66 0.924689
Target:  5'- -gCGCCAugCCGcCCACgGGaucGGGCCg -3'
miRNA:   3'- caGCGGUugGGCuGGUGgUU---CUUGGa -5'
24392 5' -55.5 NC_005264.1 + 27525 0.66 0.929991
Target:  5'- gGUCGCCGuaACCCucaguccgugGugCAuCCGAGGAUCg -3'
miRNA:   3'- -CAGCGGU--UGGG----------CugGU-GGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 107383 0.66 0.929991
Target:  5'- cUCGCCGACgaugaggacgaaUCGACCACCca-AGCCa -3'
miRNA:   3'- cAGCGGUUG------------GGCUGGUGGuucUUGGa -5'
24392 5' -55.5 NC_005264.1 + 112550 0.66 0.93356
Target:  5'- -cCGCCGACCUGuuaGCCGCUAcgcacgagcaacucGGAAUCg -3'
miRNA:   3'- caGCGGUUGGGC---UGGUGGU--------------UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 131900 0.67 0.893948
Target:  5'- gGUCGCCGAUgaCGACCcggacggACCGucGAGCCg -3'
miRNA:   3'- -CAGCGGUUGg-GCUGG-------UGGUu-CUUGGa -5'
24392 5' -55.5 NC_005264.1 + 16734 0.67 0.894609
Target:  5'- -gCGCacgAACCCGAaugcguaguCCACCAAGAcCCg -3'
miRNA:   3'- caGCGg--UUGGGCU---------GGUGGUUCUuGGa -5'
24392 5' -55.5 NC_005264.1 + 93105 0.67 0.894609
Target:  5'- cUCGCCGACauccgcuacaCCGACgCACUAcuggcgggacuAGAACCUc -3'
miRNA:   3'- cAGCGGUUG----------GGCUG-GUGGU-----------UCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 30846 0.67 0.901095
Target:  5'- -gCGCCGgucgGCCC-ACCGCCAccGGCCUg -3'
miRNA:   3'- caGCGGU----UGGGcUGGUGGUucUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 162703 0.67 0.901095
Target:  5'- -gCGCCGGCguuaaggCGGCCGCCGGGGAgCg -3'
miRNA:   3'- caGCGGUUGg------GCUGGUGGUUCUUgGa -5'
24392 5' -55.5 NC_005264.1 + 112688 0.67 0.901095
Target:  5'- -aUGCCgAGCUCGACgACCuguucGGAGCCa -3'
miRNA:   3'- caGCGG-UUGGGCUGgUGGu----UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 16426 0.67 0.887893
Target:  5'- --gGCC-GCUCGACUGCCGcGGGGCCUg -3'
miRNA:   3'- cagCGGuUGGGCUGGUGGU-UCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 149690 0.67 0.880951
Target:  5'- cGUCGUCGuCgCGACCACUAcGAACUc -3'
miRNA:   3'- -CAGCGGUuGgGCUGGUGGUuCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 128087 0.67 0.880951
Target:  5'- cGUUGagGACCCGACgCGCUGAGGACg- -3'
miRNA:   3'- -CAGCggUUGGGCUG-GUGGUUCUUGga -5'
24392 5' -55.5 NC_005264.1 + 123765 0.67 0.880951
Target:  5'- -cCGCCGAgCCGGCguCCGGGGguggACCg -3'
miRNA:   3'- caGCGGUUgGGCUGguGGUUCU----UGGa -5'
24392 5' -55.5 NC_005264.1 + 60674 0.67 0.880951
Target:  5'- cGUCGCgCAGCUgGGCUcCCAAG-GCCUc -3'
miRNA:   3'- -CAGCG-GUUGGgCUGGuGGUUCuUGGA- -5'
24392 5' -55.5 NC_005264.1 + 22313 0.67 0.880951
Target:  5'- -gCGCCucagacaaccucGACCCGAcaaCCACUAGcGAACCUc -3'
miRNA:   3'- caGCGG------------UUGGGCU---GGUGGUU-CUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 69025 0.67 0.873788
Target:  5'- -cCGCCAcCUCGGCCACaggaaaAGGGACUa -3'
miRNA:   3'- caGCGGUuGGGCUGGUGg-----UUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 109704 0.67 0.871597
Target:  5'- uUUGCCGcggcagauuGCCCGGCCuccucggcccccucGCCGAGcGCCUu -3'
miRNA:   3'- cAGCGGU---------UGGGCUGG--------------UGGUUCuUGGA- -5'
24392 5' -55.5 NC_005264.1 + 64129 0.67 0.907349
Target:  5'- uGUCGCCGAUCaGGCuCGCCAcGGcGCCg -3'
miRNA:   3'- -CAGCGGUUGGgCUG-GUGGU-UCuUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.