miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24392 5' -55.5 NC_005264.1 + 123283 0.66 0.913366
Target:  5'- aGUC-CCGGCuuG-CCGCgCGGGAACCg -3'
miRNA:   3'- -CAGcGGUUGggCuGGUG-GUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 4256 0.66 0.913366
Target:  5'- aGUC-CCGGCuuG-CCGCgCGGGAACCg -3'
miRNA:   3'- -CAGcGGUUGggCuGGUG-GUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 11854 0.66 0.913366
Target:  5'- -aCG-CGGCCCGucGCCGCCAcucgcgagcucAGAGCCg -3'
miRNA:   3'- caGCgGUUGGGC--UGGUGGU-----------UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 123051 0.66 0.913366
Target:  5'- aUCGCCAACgaGACgAUCGAG-GCCa -3'
miRNA:   3'- cAGCGGUUGggCUGgUGGUUCuUGGa -5'
24392 5' -55.5 NC_005264.1 + 130880 0.66 0.913366
Target:  5'- -aCG-CGGCCCGucGCCGCCAcucgcgagcucAGAGCCg -3'
miRNA:   3'- caGCgGUUGGGC--UGGUGGU-----------UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 64129 0.67 0.907349
Target:  5'- uGUCGCCGAUCaGGCuCGCCAcGGcGCCg -3'
miRNA:   3'- -CAGCGGUUGGgCUG-GUGGU-UCuUGGa -5'
24392 5' -55.5 NC_005264.1 + 82493 0.67 0.906734
Target:  5'- -cCGCCuccaaccGACCCGAcCCGCgcGGAGCCa -3'
miRNA:   3'- caGCGG-------UUGGGCU-GGUGguUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 30846 0.67 0.901095
Target:  5'- -gCGCCGgucgGCCC-ACCGCCAccGGCCUg -3'
miRNA:   3'- caGCGGU----UGGGcUGGUGGUucUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 162703 0.67 0.901095
Target:  5'- -gCGCCGGCguuaaggCGGCCGCCGGGGAgCg -3'
miRNA:   3'- caGCGGUUGg------GCUGGUGGUUCUUgGa -5'
24392 5' -55.5 NC_005264.1 + 112688 0.67 0.901095
Target:  5'- -aUGCCgAGCUCGACgACCuguucGGAGCCa -3'
miRNA:   3'- caGCGG-UUGGGCUGgUGGu----UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 43677 0.67 0.901095
Target:  5'- -gCGCCGGCguuaaggCGGCCGCCGGGGAgCg -3'
miRNA:   3'- caGCGGUUGg------GCUGGUGGUUCUUgGa -5'
24392 5' -55.5 NC_005264.1 + 146219 0.67 0.901095
Target:  5'- cUCGaCGugUCGAUCGCCGAGGACa- -3'
miRNA:   3'- cAGCgGUugGGCUGGUGGUUCUUGga -5'
24392 5' -55.5 NC_005264.1 + 16734 0.67 0.894609
Target:  5'- -gCGCacgAACCCGAaugcguaguCCACCAAGAcCCg -3'
miRNA:   3'- caGCGg--UUGGGCU---------GGUGGUUCUuGGa -5'
24392 5' -55.5 NC_005264.1 + 93105 0.67 0.894609
Target:  5'- cUCGCCGACauccgcuacaCCGACgCACUAcuggcgggacuAGAACCUc -3'
miRNA:   3'- cAGCGGUUG----------GGCUG-GUGGU-----------UCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 12874 0.67 0.893948
Target:  5'- gGUCGCCGAUgaCGACCcggacggACCGucGAGCCg -3'
miRNA:   3'- -CAGCGGUUGg-GCUGG-------UGGUu-CUUGGa -5'
24392 5' -55.5 NC_005264.1 + 131900 0.67 0.893948
Target:  5'- gGUCGCCGAUgaCGACCcggacggACCGucGAGCCg -3'
miRNA:   3'- -CAGCGGUUGg-GCUGG-------UGGUu-CUUGGa -5'
24392 5' -55.5 NC_005264.1 + 16426 0.67 0.887893
Target:  5'- --gGCC-GCUCGACUGCCGcGGGGCCUg -3'
miRNA:   3'- cagCGGuUGGGCUGGUGGU-UCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 60674 0.67 0.880951
Target:  5'- cGUCGCgCAGCUgGGCUcCCAAG-GCCUc -3'
miRNA:   3'- -CAGCG-GUUGGgCUGGuGGUUCuUGGA- -5'
24392 5' -55.5 NC_005264.1 + 22313 0.67 0.880951
Target:  5'- -gCGCCucagacaaccucGACCCGAcaaCCACUAGcGAACCUc -3'
miRNA:   3'- caGCGG------------UUGGGCU---GGUGGUU-CUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 123765 0.67 0.880951
Target:  5'- -cCGCCGAgCCGGCguCCGGGGguggACCg -3'
miRNA:   3'- caGCGGUUgGGCUGguGGUUCU----UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.