miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24393 3' -48 NC_005264.1 + 150117 0.66 0.999855
Target:  5'- gUCCAGUUgggcGGAGCAu-GUCAgaGGGc -3'
miRNA:   3'- -AGGUCAAaa--CCUUGUucCAGUagCCC- -5'
24393 3' -48 NC_005264.1 + 34454 0.66 0.999697
Target:  5'- cCCGGggcgUUGGA----GGUgGUCGGGa -3'
miRNA:   3'- aGGUCaa--AACCUuguuCCAgUAGCCC- -5'
24393 3' -48 NC_005264.1 + 96718 0.66 0.999697
Target:  5'- gUCCGGUUgc-GGACGGGGUCucagacgCGGc -3'
miRNA:   3'- -AGGUCAAaacCUUGUUCCAGua-----GCCc -5'
24393 3' -48 NC_005264.1 + 153481 0.66 0.999697
Target:  5'- cCCGGggcgUUGGA----GGUgGUCGGGa -3'
miRNA:   3'- aGGUCaa--AACCUuguuCCAgUAGCCC- -5'
24393 3' -48 NC_005264.1 + 72030 0.66 0.999618
Target:  5'- -gCGGUgacGcGAACAGGGUCuacagCGGGa -3'
miRNA:   3'- agGUCAaaaC-CUUGUUCCAGua---GCCC- -5'
24393 3' -48 NC_005264.1 + 149440 0.67 0.999522
Target:  5'- gCCGGUgcgGaGAGCugcggcggagGAGGUC-UCGGGg -3'
miRNA:   3'- aGGUCAaaaC-CUUG----------UUCCAGuAGCCC- -5'
24393 3' -48 NC_005264.1 + 30413 0.67 0.999522
Target:  5'- gCCGGUgcgGaGAGCugcggcggagGAGGUC-UCGGGg -3'
miRNA:   3'- aGGUCAaaaC-CUUG----------UUCCAGuAGCCC- -5'
24393 3' -48 NC_005264.1 + 80027 0.67 0.999478
Target:  5'- cUCCGGU--UGGAGCGGGGgagaccacugucgCGUCGa- -3'
miRNA:   3'- -AGGUCAaaACCUUGUUCCa------------GUAGCcc -5'
24393 3' -48 NC_005264.1 + 37031 0.67 0.998978
Target:  5'- gUCCAGgcuccgugcggGGGACAcGG-CAUUGGGu -3'
miRNA:   3'- -AGGUCaaaa-------CCUUGUuCCaGUAGCCC- -5'
24393 3' -48 NC_005264.1 + 49634 0.67 0.998893
Target:  5'- aCCAGg---GGGcCAAGGUgcucgacccggaCGUCGGGu -3'
miRNA:   3'- aGGUCaaaaCCUuGUUCCA------------GUAGCCC- -5'
24393 3' -48 NC_005264.1 + 110285 0.68 0.998375
Target:  5'- ---cGUUUgcucaaGAGCAAGGUgGUCGGGa -3'
miRNA:   3'- agguCAAAac----CUUGUUCCAgUAGCCC- -5'
24393 3' -48 NC_005264.1 + 105609 0.68 0.998047
Target:  5'- aCCguGGUgcgUGGGAaauuGAGGcCGUCGGGg -3'
miRNA:   3'- aGG--UCAaa-ACCUUg---UUCCaGUAGCCC- -5'
24393 3' -48 NC_005264.1 + 44370 0.69 0.996711
Target:  5'- aCCAGUUgccugccUGGAACAcGGUgGUCGa- -3'
miRNA:   3'- aGGUCAAa------ACCUUGUuCCAgUAGCcc -5'
24393 3' -48 NC_005264.1 + 79429 0.69 0.996711
Target:  5'- cCCAGcg-UGGGcgguGCGGGGUCucCGGGg -3'
miRNA:   3'- aGGUCaaaACCU----UGUUCCAGuaGCCC- -5'
24393 3' -48 NC_005264.1 + 22646 0.71 0.984092
Target:  5'- gCCAGguauagcaagugcUUUUGGGGgc-GGUCGUCGGGg -3'
miRNA:   3'- aGGUC-------------AAAACCUUguuCCAGUAGCCC- -5'
24393 3' -48 NC_005264.1 + 21639 0.71 0.982297
Target:  5'- -gUAGUUguuucaGGggUAAGGUCcUCGGGg -3'
miRNA:   3'- agGUCAAaa----CCuuGUUCCAGuAGCCC- -5'
24393 3' -48 NC_005264.1 + 1286 0.72 0.975208
Target:  5'- cUCUAGg--UGGGACuAGGUgaGUCGGGc -3'
miRNA:   3'- -AGGUCaaaACCUUGuUCCAg-UAGCCC- -5'
24393 3' -48 NC_005264.1 + 120313 0.72 0.975208
Target:  5'- cUCUAGg--UGGGACuAGGUgaGUCGGGc -3'
miRNA:   3'- -AGGUCaaaACCUUGuUCCAg-UAGCCC- -5'
24393 3' -48 NC_005264.1 + 151604 0.73 0.959124
Target:  5'- uUCUAGgg--GGGACAAGGgguUCGGGu -3'
miRNA:   3'- -AGGUCaaaaCCUUGUUCCaguAGCCC- -5'
24393 3' -48 NC_005264.1 + 88228 0.77 0.84967
Target:  5'- gCCAGgg--GGAACGugGGGUCAggcgCGGGg -3'
miRNA:   3'- aGGUCaaaaCCUUGU--UCCAGUa---GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.