miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24393 5' -55.7 NC_005264.1 + 37025 0.66 0.923863
Target:  5'- cCCCucUGAGCCGCCgcacccaucccUGGCUCCcuUGuGGa -3'
miRNA:   3'- -GGGu-ACUCGGUGG-----------ACUGAGG--ACuCUa -5'
24393 5' -55.7 NC_005264.1 + 110124 0.66 0.923863
Target:  5'- gCCGaGAGCCGCCgcGCUUUUGGGGg -3'
miRNA:   3'- gGGUaCUCGGUGGacUGAGGACUCUa -5'
24393 5' -55.7 NC_005264.1 + 155748 0.66 0.923863
Target:  5'- aUgGUGGGCCGCCUGcuaccAUUCCUGGu-- -3'
miRNA:   3'- gGgUACUCGGUGGAC-----UGAGGACUcua -5'
24393 5' -55.7 NC_005264.1 + 156052 0.66 0.923863
Target:  5'- cCCCucUGAGCCGCCgcacccaucccUGGCUCCcuUGuGGa -3'
miRNA:   3'- -GGGu-ACUCGGUGG-----------ACUGAGG--ACuCUa -5'
24393 5' -55.7 NC_005264.1 + 62128 0.66 0.912409
Target:  5'- cUCCA-GAGCCACgUaa-UCCUGAGAc -3'
miRNA:   3'- -GGGUaCUCGGUGgAcugAGGACUCUa -5'
24393 5' -55.7 NC_005264.1 + 145148 0.66 0.893439
Target:  5'- aCCCGacacGAGCCGCCgcggccucGGCUgcgCCUGAGGc -3'
miRNA:   3'- -GGGUa---CUCGGUGGa-------CUGA---GGACUCUa -5'
24393 5' -55.7 NC_005264.1 + 158000 0.67 0.886648
Target:  5'- gCCUAcucUGuGCCGCCUGGCggaacaCCUGcAGAg -3'
miRNA:   3'- -GGGU---ACuCGGUGGACUGa-----GGAC-UCUa -5'
24393 5' -55.7 NC_005264.1 + 38973 0.67 0.886648
Target:  5'- gCCUAcucUGuGCCGCCUGGCggaacaCCUGcAGAg -3'
miRNA:   3'- -GGGU---ACuCGGUGGACUGa-----GGAC-UCUa -5'
24393 5' -55.7 NC_005264.1 + 12306 0.7 0.721825
Target:  5'- gCCCGagccugGAGCCGCCUGACcuUCCUcGuGAc -3'
miRNA:   3'- -GGGUa-----CUCGGUGGACUG--AGGA-CuCUa -5'
24393 5' -55.7 NC_005264.1 + 131333 0.7 0.721825
Target:  5'- gCCCGagccugGAGCCGCCUGACcuUCCUcGuGAc -3'
miRNA:   3'- -GGGUa-----CUCGGUGGACUG--AGGA-CuCUa -5'
24393 5' -55.7 NC_005264.1 + 43090 0.71 0.681469
Target:  5'- aCCA-GAGCCGCCUcugccGAUUCCgugGAGAc -3'
miRNA:   3'- gGGUaCUCGGUGGA-----CUGAGGa--CUCUa -5'
24393 5' -55.7 NC_005264.1 + 118022 1.07 0.004123
Target:  5'- gCCCAUGAGCCACCUGACUCCUGAGAUc -3'
miRNA:   3'- -GGGUACUCGGUGGACUGAGGACUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.