miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24394 3' -65.9 NC_005264.1 + 48534 0.68 0.379821
Target:  5'- uUUCCGCGuCGUCCCGCGCGcccccgucgccuucGucGUCCg -3'
miRNA:   3'- uGAGGCGC-GCGGGGCGCGU--------------CccCAGG- -5'
24394 3' -65.9 NC_005264.1 + 72201 0.68 0.374488
Target:  5'- uCUCCGCGCGCCCUuc---GGGGUUg -3'
miRNA:   3'- uGAGGCGCGCGGGGcgcguCCCCAGg -5'
24394 3' -65.9 NC_005264.1 + 5527 0.68 0.374488
Target:  5'- gACagCCGCgGCGUCUCGCGCGGagcGGGUUUc -3'
miRNA:   3'- -UGa-GGCG-CGCGGGGCGCGUC---CCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 30633 0.68 0.366959
Target:  5'- -aUCCGCGCGCagCGCGUAGGucGUCg -3'
miRNA:   3'- ugAGGCGCGCGggGCGCGUCCc-CAGg -5'
24394 3' -65.9 NC_005264.1 + 149660 0.68 0.366959
Target:  5'- -aUCCGCGCGCagCGCGUAGGucGUCg -3'
miRNA:   3'- ugAGGCGCGCGggGCGCGUCCc-CAGg -5'
24394 3' -65.9 NC_005264.1 + 60886 0.69 0.352216
Target:  5'- uCUCgGCGUaCgCCGCGguGGGG-CCg -3'
miRNA:   3'- uGAGgCGCGcGgGGCGCguCCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 9325 0.69 0.324008
Target:  5'- gUUCCGUuCGuCCCCGC-CAGGGGcggCCg -3'
miRNA:   3'- uGAGGCGcGC-GGGGCGcGUCCCCa--GG- -5'
24394 3' -65.9 NC_005264.1 + 128998 0.69 0.324008
Target:  5'- aGCUCUGC-CGCggCGCGCAGGGGa-- -3'
miRNA:   3'- -UGAGGCGcGCGggGCGCGUCCCCagg -5'
24394 3' -65.9 NC_005264.1 + 62998 0.69 0.319924
Target:  5'- gACUCCaagGCGUGCUUgGCGCAcuccagccuuaccccGGGGUCg -3'
miRNA:   3'- -UGAGG---CGCGCGGGgCGCGU---------------CCCCAGg -5'
24394 3' -65.9 NC_005264.1 + 146078 0.7 0.297517
Target:  5'- aACagCGCGC-CCCCGCGC--GGGUCUu -3'
miRNA:   3'- -UGagGCGCGcGGGGCGCGucCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 80324 0.71 0.272737
Target:  5'- -aUCCGUGCcagacaaugGCUCCGCGCGGgucGGGUCg -3'
miRNA:   3'- ugAGGCGCG---------CGGGGCGCGUC---CCCAGg -5'
24394 3' -65.9 NC_005264.1 + 20262 0.71 0.266806
Target:  5'- --gCgGCGCgGCCUCGCGgAGGGGaCCg -3'
miRNA:   3'- ugaGgCGCG-CGGGGCGCgUCCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 64732 0.71 0.244125
Target:  5'- gGCUCgGCGCcguGCCCCGCGCAaGGaUCg -3'
miRNA:   3'- -UGAGgCGCG---CGGGGCGCGUcCCcAGg -5'
24394 3' -65.9 NC_005264.1 + 58121 0.71 0.244125
Target:  5'- cGCUgCUGCGCGaCCUCGCGCAGccGUCUg -3'
miRNA:   3'- -UGA-GGCGCGC-GGGGCGCGUCccCAGG- -5'
24394 3' -65.9 NC_005264.1 + 12139 0.72 0.228184
Target:  5'- cCUCCGCcgGCGCugCCCGuUGCuGGGGUCUc -3'
miRNA:   3'- uGAGGCG--CGCG--GGGC-GCGuCCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 71427 0.72 0.218052
Target:  5'- gACUCCGCcgGUGCCCCgGCGCuAGGGccaaCCa -3'
miRNA:   3'- -UGAGGCG--CGCGGGG-CGCG-UCCCca--GG- -5'
24394 3' -65.9 NC_005264.1 + 159667 0.72 0.218052
Target:  5'- --cCCGCGcCGUCgCGCGCGGaGGGUCg -3'
miRNA:   3'- ugaGGCGC-GCGGgGCGCGUC-CCCAGg -5'
24394 3' -65.9 NC_005264.1 + 64527 0.72 0.213132
Target:  5'- -gUCCGCGC-CgCCGCGgAGGGGgguUCCg -3'
miRNA:   3'- ugAGGCGCGcGgGGCGCgUCCCC---AGG- -5'
24394 3' -65.9 NC_005264.1 + 125167 0.72 0.205459
Target:  5'- gGCgagggCCGCGCGCCCguCGCGCAucgcgugcacgauguGGGGcacgCCg -3'
miRNA:   3'- -UGa----GGCGCGCGGG--GCGCGU---------------CCCCa---GG- -5'
24394 3' -65.9 NC_005264.1 + 6140 0.72 0.205459
Target:  5'- gGCgagggCCGCGCGCCCguCGCGCAucgcgugcacgauguGGGGcacgCCg -3'
miRNA:   3'- -UGa----GGCGCGCGGG--GCGCGU---------------CCCCa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.