miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24395 3' -42 NC_005264.1 + 83404 0.66 1
Target:  5'- gUCUGcGCGccGCGGGUCGUUGAgaAUCGu -3'
miRNA:   3'- gAGACaUGU--UGUUUAGCGAUU--UAGCu -5'
24395 3' -42 NC_005264.1 + 61060 0.68 1
Target:  5'- uUCUGcggugGCAACAAugacuUCGCUGGugacauuGUCGAu -3'
miRNA:   3'- gAGACa----UGUUGUUu----AGCGAUU-------UAGCU- -5'
24395 3' -42 NC_005264.1 + 98774 0.67 1
Target:  5'- gCUCUGcUGCGgcugACAGAgcugCGCgAGAUCGGg -3'
miRNA:   3'- -GAGAC-AUGU----UGUUUa---GCGaUUUAGCU- -5'
24395 3' -42 NC_005264.1 + 118637 0.66 1
Target:  5'- gCUCUGgggagggggggggGgAAgAGAUCGUUAGGUCGGu -3'
miRNA:   3'- -GAGACa------------UgUUgUUUAGCGAUUUAGCU- -5'
24395 3' -42 NC_005264.1 + 247 0.67 1
Target:  5'- gUUUGUGCGGCGg--CGCUGGAcgCGGc -3'
miRNA:   3'- gAGACAUGUUGUuuaGCGAUUUa-GCU- -5'
24395 3' -42 NC_005264.1 + 21598 0.69 1
Target:  5'- --gUGUGCcGCGAAUCGUUugauAUCGAc -3'
miRNA:   3'- gagACAUGuUGUUUAGCGAuu--UAGCU- -5'
24395 3' -42 NC_005264.1 + 57991 0.68 1
Target:  5'- aUCUGgcguucGCAAUaggagcuuugggGAGUUGCUGAAUCGGu -3'
miRNA:   3'- gAGACa-----UGUUG------------UUUAGCGAUUUAGCU- -5'
24395 3' -42 NC_005264.1 + 42591 0.72 0.99991
Target:  5'- ---aGUAUcGCAAuUCGCUGAGUCGGu -3'
miRNA:   3'- gagaCAUGuUGUUuAGCGAUUUAGCU- -5'
24395 3' -42 NC_005264.1 + 6168 0.74 0.999316
Target:  5'- -gCUGUACAACAGcgacgcGUCGCUGuuGAUCa- -3'
miRNA:   3'- gaGACAUGUUGUU------UAGCGAU--UUAGcu -5'
24395 3' -42 NC_005264.1 + 60172 0.75 0.999147
Target:  5'- cCUCUGU-CAGCAcauauuGGUCGCU--GUCGAg -3'
miRNA:   3'- -GAGACAuGUUGU------UUAGCGAuuUAGCU- -5'
24395 3' -42 NC_005264.1 + 8888 0.75 0.998702
Target:  5'- gCUCUGUACGuACAAcguGUCGCUGGAgacgCGc -3'
miRNA:   3'- -GAGACAUGU-UGUU---UAGCGAUUUa---GCu -5'
24395 3' -42 NC_005264.1 + 116198 1.12 0.052547
Target:  5'- cCUCUGUACAACAAAUCGCUAAAUCGAg -3'
miRNA:   3'- -GAGACAUGUUGUUUAGCGAUUUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.