Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24395 | 3' | -42 | NC_005264.1 | + | 116198 | 1.12 | 0.052547 |
Target: 5'- cCUCUGUACAACAAAUCGCUAAAUCGAg -3' miRNA: 3'- -GAGACAUGUUGUUUAGCGAUUUAGCU- -5' |
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24395 | 3' | -42 | NC_005264.1 | + | 8888 | 0.75 | 0.998702 |
Target: 5'- gCUCUGUACGuACAAcguGUCGCUGGAgacgCGc -3' miRNA: 3'- -GAGACAUGU-UGUU---UAGCGAUUUa---GCu -5' |
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24395 | 3' | -42 | NC_005264.1 | + | 60172 | 0.75 | 0.999147 |
Target: 5'- cCUCUGU-CAGCAcauauuGGUCGCU--GUCGAg -3' miRNA: 3'- -GAGACAuGUUGU------UUAGCGAuuUAGCU- -5' |
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24395 | 3' | -42 | NC_005264.1 | + | 6168 | 0.74 | 0.999316 |
Target: 5'- -gCUGUACAACAGcgacgcGUCGCUGuuGAUCa- -3' miRNA: 3'- gaGACAUGUUGUU------UAGCGAU--UUAGcu -5' |
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24395 | 3' | -42 | NC_005264.1 | + | 42591 | 0.72 | 0.99991 |
Target: 5'- ---aGUAUcGCAAuUCGCUGAGUCGGu -3' miRNA: 3'- gagaCAUGuUGUUuAGCGAUUUAGCU- -5' |
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24395 | 3' | -42 | NC_005264.1 | + | 57991 | 0.68 | 1 |
Target: 5'- aUCUGgcguucGCAAUaggagcuuugggGAGUUGCUGAAUCGGu -3' miRNA: 3'- gAGACa-----UGUUG------------UUUAGCGAUUUAGCU- -5' |
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24395 | 3' | -42 | NC_005264.1 | + | 61060 | 0.68 | 1 |
Target: 5'- uUCUGcggugGCAACAAugacuUCGCUGGugacauuGUCGAu -3' miRNA: 3'- gAGACa----UGUUGUUu----AGCGAUU-------UAGCU- -5' |
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24395 | 3' | -42 | NC_005264.1 | + | 98774 | 0.67 | 1 |
Target: 5'- gCUCUGcUGCGgcugACAGAgcugCGCgAGAUCGGg -3' miRNA: 3'- -GAGAC-AUGU----UGUUUa---GCGaUUUAGCU- -5' |
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24395 | 3' | -42 | NC_005264.1 | + | 118637 | 0.66 | 1 |
Target: 5'- gCUCUGgggagggggggggGgAAgAGAUCGUUAGGUCGGu -3' miRNA: 3'- -GAGACa------------UgUUgUUUAGCGAUUUAGCU- -5' |
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24395 | 3' | -42 | NC_005264.1 | + | 247 | 0.67 | 1 |
Target: 5'- gUUUGUGCGGCGg--CGCUGGAcgCGGc -3' miRNA: 3'- gAGACAUGUUGUuuaGCGAUUUa-GCU- -5' |
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24395 | 3' | -42 | NC_005264.1 | + | 21598 | 0.69 | 1 |
Target: 5'- --gUGUGCcGCGAAUCGUUugauAUCGAc -3' miRNA: 3'- gagACAUGuUGUUUAGCGAuu--UAGCU- -5' |
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24395 | 3' | -42 | NC_005264.1 | + | 83404 | 0.66 | 1 |
Target: 5'- gUCUGcGCGccGCGGGUCGUUGAgaAUCGu -3' miRNA: 3'- gAGACaUGU--UGUUUAGCGAUU--UAGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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