miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24395 5' -62.9 NC_005264.1 + 75697 0.68 0.490514
Target:  5'- cGCCGUCuuucggcgcgaagacUggugCGCCCCGCGGGcGcCGGAg -3'
miRNA:   3'- uCGGCAG---------------Ga---GCGGGGCGUCC-CuGUCU- -5'
24395 5' -62.9 NC_005264.1 + 109495 0.68 0.493246
Target:  5'- cGCCGUCCUuaggcugguugggcUGCCCCugcuggccaaGCAGccccuGGGCAGAc -3'
miRNA:   3'- uCGGCAGGA--------------GCGGGG----------CGUC-----CCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 12517 0.68 0.477855
Target:  5'- aGGUCGUCCUCGCugcaucuagCCgGUAGGaGCGGGg -3'
miRNA:   3'- -UCGGCAGGAGCG---------GGgCGUCCcUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 71104 0.68 0.495986
Target:  5'- cAGCCGcCCUCgGCCCUGguGa-GCAGAu -3'
miRNA:   3'- -UCGGCaGGAG-CGGGGCguCccUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 160450 0.68 0.514422
Target:  5'- aGGCCGgcgCCggGCuCCUGCGGGcGACGGc -3'
miRNA:   3'- -UCGGCa--GGagCG-GGGCGUCC-CUGUCu -5'
24395 5' -62.9 NC_005264.1 + 155301 0.68 0.514422
Target:  5'- aGGCCGUCCUCG-UgCGUAGGcgaggagagGGCGGAc -3'
miRNA:   3'- -UCGGCAGGAGCgGgGCGUCC---------CUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 21087 0.68 0.523744
Target:  5'- uGCCGUgCUCGCCuCCG-AGGGcCuGAc -3'
miRNA:   3'- uCGGCAgGAGCGG-GGCgUCCCuGuCU- -5'
24395 5' -62.9 NC_005264.1 + 109588 0.67 0.561627
Target:  5'- aAGCCagaCaCGCgCCCGCGGGGcACGGAa -3'
miRNA:   3'- -UCGGcagGaGCG-GGGCGUCCC-UGUCU- -5'
24395 5' -62.9 NC_005264.1 + 994 0.67 0.541629
Target:  5'- aAGCU---CUUGCCCCGCgcccgugugguggGGGGGCAGGg -3'
miRNA:   3'- -UCGGcagGAGCGGGGCG-------------UCCCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 38917 0.67 0.561627
Target:  5'- -uUCGUCCUCGCCuCCGCGGucccCGGAg -3'
miRNA:   3'- ucGGCAGGAGCGG-GGCGUCccu-GUCU- -5'
24395 5' -62.9 NC_005264.1 + 53324 0.66 0.60993
Target:  5'- gGGCUG-CUUgGCCa-GCAGGGGCAGc -3'
miRNA:   3'- -UCGGCaGGAgCGGggCGUCCCUGUCu -5'
24395 5' -62.9 NC_005264.1 + 125727 0.66 0.620634
Target:  5'- cGGCCG-CCUCGCCCuCGUccugccaccaccuuGGGCGGGc -3'
miRNA:   3'- -UCGGCaGGAGCGGG-GCGuc------------CCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 143579 0.66 0.6294
Target:  5'- uGCCGUCCcCGgggCCCGgAGGGAacgAGAa -3'
miRNA:   3'- uCGGCAGGaGCg--GGGCgUCCCUg--UCU- -5'
24395 5' -62.9 NC_005264.1 + 123845 0.66 0.616741
Target:  5'- -uCCGUCgUCGCUCUGCAGGuGuuccgccaggcggcACAGAg -3'
miRNA:   3'- ucGGCAGgAGCGGGGCGUCC-C--------------UGUCU- -5'
24395 5' -62.9 NC_005264.1 + 37025 0.66 0.639141
Target:  5'- cAGUaCGUCCagGCUCCGUgcgGGGGACAc- -3'
miRNA:   3'- -UCG-GCAGGagCGGGGCG---UCCCUGUcu -5'
24395 5' -62.9 NC_005264.1 + 6700 0.66 0.626477
Target:  5'- cGGCCG-CCUCGCCCuCGUccugcccaccaccuuGGGCGGGc -3'
miRNA:   3'- -UCGGCaGGAGCGGG-GCGuc-------------CCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 64302 0.66 0.619661
Target:  5'- --gCGUCCaUGCCuCCGCAGaGGcCAGAa -3'
miRNA:   3'- ucgGCAGGaGCGG-GGCGUC-CCuGUCU- -5'
24395 5' -62.9 NC_005264.1 + 4819 0.66 0.616741
Target:  5'- -uCCGUCgUCGCUCUGCAGGuGuuccgccaggcggcACAGAg -3'
miRNA:   3'- ucGGCAGgAGCGGGGCGUCC-C--------------UGUCU- -5'
24395 5' -62.9 NC_005264.1 + 7531 0.66 0.60993
Target:  5'- cGCCcucUCCUCGCCUaCGCAcGaGGACGGc -3'
miRNA:   3'- uCGGc--AGGAGCGGG-GCGU-C-CCUGUCu -5'
24395 5' -62.9 NC_005264.1 + 152111 0.66 0.600215
Target:  5'- uGCCGUCggUGUCCgCGCcgGGGGACAa- -3'
miRNA:   3'- uCGGCAGgaGCGGG-GCG--UCCCUGUcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.