miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24395 5' -62.9 NC_005264.1 + 116235 1.08 0.000866
Target:  5'- gAGCCGUCCUCGCCCCGCAGGGACAGAg -3'
miRNA:   3'- -UCGGCAGGAGCGGGGCGUCCCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 67654 0.75 0.187432
Target:  5'- cGGcCCGUCUUCGuuauggcacggcaCCuuGCAGGGGCAGAa -3'
miRNA:   3'- -UC-GGCAGGAGC-------------GGggCGUCCCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 146346 0.71 0.324906
Target:  5'- cGCCGgcgugCCUCGaCCCCGCAGGccaccGCGGc -3'
miRNA:   3'- uCGGCa----GGAGC-GGGGCGUCCc----UGUCu -5'
24395 5' -62.9 NC_005264.1 + 108146 0.71 0.353901
Target:  5'- -cCUGUCCUCGgCgCCGguGaGGACAGAa -3'
miRNA:   3'- ucGGCAGGAGCgG-GGCguC-CCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 108151 0.71 0.353901
Target:  5'- gGGCCGUCga-GCCUCGCGGGGAg--- -3'
miRNA:   3'- -UCGGCAGgagCGGGGCGUCCCUgucu -5'
24395 5' -62.9 NC_005264.1 + 7071 0.7 0.400715
Target:  5'- cGGCCGgcgCCgUCGCgCUGCGGGGAacuGAg -3'
miRNA:   3'- -UCGGCa--GG-AGCGgGGCGUCCCUgu-CU- -5'
24395 5' -62.9 NC_005264.1 + 126098 0.7 0.400715
Target:  5'- cGGCCGgcgCCgUCGCgCUGCGGGGAacuGAg -3'
miRNA:   3'- -UCGGCa--GG-AGCGgGGCGUCCCUgu-CU- -5'
24395 5' -62.9 NC_005264.1 + 4997 0.69 0.425556
Target:  5'- cGUCGUUCUCGUCCgCGCcGGGGucgccGCGGAg -3'
miRNA:   3'- uCGGCAGGAGCGGG-GCG-UCCC-----UGUCU- -5'
24395 5' -62.9 NC_005264.1 + 124024 0.69 0.425556
Target:  5'- cGUCGUUCUCGUCCgCGCcGGGGucgccGCGGAg -3'
miRNA:   3'- uCGGCAGGAGCGGG-GCG-UCCC-----UGUCU- -5'
24395 5' -62.9 NC_005264.1 + 123033 0.69 0.434038
Target:  5'- uGCC-UCCUCGCCCaC-CAGGGGCu-- -3'
miRNA:   3'- uCGGcAGGAGCGGG-GcGUCCCUGucu -5'
24395 5' -62.9 NC_005264.1 + 126027 0.69 0.434038
Target:  5'- cGCCGcgCCUCGCCugcgCCGCAGaGACAa- -3'
miRNA:   3'- uCGGCa-GGAGCGG----GGCGUCcCUGUcu -5'
24395 5' -62.9 NC_005264.1 + 4006 0.69 0.434038
Target:  5'- uGCC-UCCUCGCCCaC-CAGGGGCu-- -3'
miRNA:   3'- uCGGcAGGAGCGGG-GcGUCCCUGucu -5'
24395 5' -62.9 NC_005264.1 + 16105 0.69 0.442617
Target:  5'- cGCCGcCCUCGUucgaCCCuaaGCuuGGGGCAGAa -3'
miRNA:   3'- uCGGCaGGAGCG----GGG---CGu-CCCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 108571 0.69 0.451291
Target:  5'- uGGCCaugGUCCUCGCCCCGCucccacucGACAc- -3'
miRNA:   3'- -UCGG---CAGGAGCGGGGCGucc-----CUGUcu -5'
24395 5' -62.9 NC_005264.1 + 65373 0.69 0.460057
Target:  5'- cGCCG-CCggguagaGUCUCGCAGGcGACGGAg -3'
miRNA:   3'- uCGGCaGGag-----CGGGGCGUCC-CUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 12517 0.68 0.477855
Target:  5'- aGGUCGUCCUCGCugcaucuagCCgGUAGGaGCGGGg -3'
miRNA:   3'- -UCGGCAGGAGCG---------GGgCGUCCcUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 131544 0.68 0.477855
Target:  5'- aGGUCGUCCUCGCugcaucuagCCgGUAGGaGCGGGg -3'
miRNA:   3'- -UCGGCAGGAGCG---------GGgCGUCCcUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 75697 0.68 0.490514
Target:  5'- cGCCGUCuuucggcgcgaagacUggugCGCCCCGCGGGcGcCGGAg -3'
miRNA:   3'- uCGGCAG---------------Ga---GCGGGGCGUCC-CuGUCU- -5'
24395 5' -62.9 NC_005264.1 + 109495 0.68 0.493246
Target:  5'- cGCCGUCCUuaggcugguugggcUGCCCCugcuggccaaGCAGccccuGGGCAGAc -3'
miRNA:   3'- uCGGCAGGA--------------GCGGGG----------CGUC-----CCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 71104 0.68 0.495986
Target:  5'- cAGCCGcCCUCgGCCCUGguGa-GCAGAu -3'
miRNA:   3'- -UCGGCaGGAG-CGGGGCguCccUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.