miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24395 5' -62.9 NC_005264.1 + 994 0.67 0.541629
Target:  5'- aAGCU---CUUGCCCCGCgcccgugugguggGGGGGCAGGg -3'
miRNA:   3'- -UCGGcagGAGCGGGGCG-------------UCCCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 4006 0.69 0.434038
Target:  5'- uGCC-UCCUCGCCCaC-CAGGGGCu-- -3'
miRNA:   3'- uCGGcAGGAGCGGG-GcGUCCCUGucu -5'
24395 5' -62.9 NC_005264.1 + 4819 0.66 0.616741
Target:  5'- -uCCGUCgUCGCUCUGCAGGuGuuccgccaggcggcACAGAg -3'
miRNA:   3'- ucGGCAGgAGCGGGGCGUCC-C--------------UGUCU- -5'
24395 5' -62.9 NC_005264.1 + 4997 0.69 0.425556
Target:  5'- cGUCGUUCUCGUCCgCGCcGGGGucgccGCGGAg -3'
miRNA:   3'- uCGGCAGGAGCGGG-GCG-UCCC-----UGUCU- -5'
24395 5' -62.9 NC_005264.1 + 6262 0.66 0.590521
Target:  5'- cGCgGUCgUCGCCgCCGUcGGGAggcaaaCAGAu -3'
miRNA:   3'- uCGgCAGgAGCGG-GGCGuCCCU------GUCU- -5'
24395 5' -62.9 NC_005264.1 + 6563 0.66 0.600215
Target:  5'- cGCCucGUCCacggugaugCGCCCCcCAGGGGCcGAc -3'
miRNA:   3'- uCGG--CAGGa--------GCGGGGcGUCCCUGuCU- -5'
24395 5' -62.9 NC_005264.1 + 6700 0.66 0.626477
Target:  5'- cGGCCG-CCUCGCCCuCGUccugcccaccaccuuGGGCGGGc -3'
miRNA:   3'- -UCGGCaGGAGCGGG-GCGuc-------------CCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 7071 0.7 0.400715
Target:  5'- cGGCCGgcgCCgUCGCgCUGCGGGGAacuGAg -3'
miRNA:   3'- -UCGGCa--GG-AGCGgGGCGUCCCUgu-CU- -5'
24395 5' -62.9 NC_005264.1 + 7531 0.66 0.60993
Target:  5'- cGCCcucUCCUCGCCUaCGCAcGaGGACGGc -3'
miRNA:   3'- uCGGc--AGGAGCGGG-GCGU-C-CCUGUCu -5'
24395 5' -62.9 NC_005264.1 + 12517 0.68 0.477855
Target:  5'- aGGUCGUCCUCGCugcaucuagCCgGUAGGaGCGGGg -3'
miRNA:   3'- -UCGGCAGGAGCG---------GGgCGUCCcUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 16105 0.69 0.442617
Target:  5'- cGCCGcCCUCGUucgaCCCuaaGCuuGGGGCAGAa -3'
miRNA:   3'- uCGGCaGGAGCG----GGG---CGu-CCCUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 21087 0.68 0.523744
Target:  5'- uGCCGUgCUCGCCuCCG-AGGGcCuGAc -3'
miRNA:   3'- uCGGCAgGAGCGG-GGCgUCCCuGuCU- -5'
24395 5' -62.9 NC_005264.1 + 24649 0.68 0.514422
Target:  5'- uGGCCG-CCUUGUCuCUGCAGcGaGGCAGGc -3'
miRNA:   3'- -UCGGCaGGAGCGG-GGCGUC-C-CUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 36274 0.68 0.514422
Target:  5'- aGGCCGUCCUCG-UgCGUAGGcgaggagagGGCGGAc -3'
miRNA:   3'- -UCGGCAGGAGCgGgGCGUCC---------CUGUCU- -5'
24395 5' -62.9 NC_005264.1 + 37025 0.66 0.639141
Target:  5'- cAGUaCGUCCagGCUCCGUgcgGGGGACAc- -3'
miRNA:   3'- -UCG-GCAGGagCGGGGCG---UCCCUGUcu -5'
24395 5' -62.9 NC_005264.1 + 38917 0.67 0.561627
Target:  5'- -uUCGUCCUCGCCuCCGCGGucccCGGAg -3'
miRNA:   3'- ucGGCAGGAGCGG-GGCGUCccu-GUCU- -5'
24395 5' -62.9 NC_005264.1 + 41423 0.68 0.514422
Target:  5'- aGGCCGgcgCCggGCuCCUGCGGGcGACGGc -3'
miRNA:   3'- -UCGGCa--GGagCG-GGGCGUCC-CUGUCu -5'
24395 5' -62.9 NC_005264.1 + 53324 0.66 0.60993
Target:  5'- gGGCUG-CUUgGCCa-GCAGGGGCAGc -3'
miRNA:   3'- -UCGGCaGGAgCGGggCGUCCCUGUCu -5'
24395 5' -62.9 NC_005264.1 + 64302 0.66 0.619661
Target:  5'- --gCGUCCaUGCCuCCGCAGaGGcCAGAa -3'
miRNA:   3'- ucgGCAGGaGCGG-GGCGUC-CCuGUCU- -5'
24395 5' -62.9 NC_005264.1 + 65373 0.69 0.460057
Target:  5'- cGCCG-CCggguagaGUCUCGCAGGcGACGGAg -3'
miRNA:   3'- uCGGCaGGag-----CGGGGCGUCC-CUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.