Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 67654 | 0.75 | 0.187432 |
Target: 5'- cGGcCCGUCUUCGuuauggcacggcaCCuuGCAGGGGCAGAa -3' miRNA: 3'- -UC-GGCAGGAGC-------------GGggCGUCCCUGUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 71104 | 0.68 | 0.495986 |
Target: 5'- cAGCCGcCCUCgGCCCUGguGa-GCAGAu -3' miRNA: 3'- -UCGGCaGGAG-CGGGGCguCccUGUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 75697 | 0.68 | 0.490514 |
Target: 5'- cGCCGUCuuucggcgcgaagacUggugCGCCCCGCGGGcGcCGGAg -3' miRNA: 3'- uCGGCAG---------------Ga---GCGGGGCGUCC-CuGUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 83285 | 0.66 | 0.590521 |
Target: 5'- cGGCCGcaaggCCUUGCCgCGguGcGGcCAGAu -3' miRNA: 3'- -UCGGCa----GGAGCGGgGCguC-CCuGUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 104846 | 0.66 | 0.600215 |
Target: 5'- gGGCCGcugagCCacggcCGCCgCGCGGGGACuccGAu -3' miRNA: 3'- -UCGGCa----GGa----GCGGgGCGUCCCUGu--CU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 108146 | 0.71 | 0.353901 |
Target: 5'- -cCUGUCCUCGgCgCCGguGaGGACAGAa -3' miRNA: 3'- ucGGCAGGAGCgG-GGCguC-CCUGUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 108151 | 0.71 | 0.353901 |
Target: 5'- gGGCCGUCga-GCCUCGCGGGGAg--- -3' miRNA: 3'- -UCGGCAGgagCGGGGCGUCCCUgucu -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 108571 | 0.69 | 0.451291 |
Target: 5'- uGGCCaugGUCCUCGCCCCGCucccacucGACAc- -3' miRNA: 3'- -UCGG---CAGGAGCGGGGCGucc-----CUGUcu -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 109495 | 0.68 | 0.493246 |
Target: 5'- cGCCGUCCUuaggcugguugggcUGCCCCugcuggccaaGCAGccccuGGGCAGAc -3' miRNA: 3'- uCGGCAGGA--------------GCGGGG----------CGUC-----CCUGUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 109588 | 0.67 | 0.561627 |
Target: 5'- aAGCCagaCaCGCgCCCGCGGGGcACGGAa -3' miRNA: 3'- -UCGGcagGaGCG-GGGCGUCCC-UGUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 114910 | 0.68 | 0.514422 |
Target: 5'- gAGCCGUUCUCcgucgauaagGCUCCGCGGGcACAc- -3' miRNA: 3'- -UCGGCAGGAG----------CGGGGCGUCCcUGUcu -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 116235 | 1.08 | 0.000866 |
Target: 5'- gAGCCGUCCUCGCCCCGCAGGGACAGAg -3' miRNA: 3'- -UCGGCAGGAGCGGGGCGUCCCUGUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 123033 | 0.69 | 0.434038 |
Target: 5'- uGCC-UCCUCGCCCaC-CAGGGGCu-- -3' miRNA: 3'- uCGGcAGGAGCGGG-GcGUCCCUGucu -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 123845 | 0.66 | 0.616741 |
Target: 5'- -uCCGUCgUCGCUCUGCAGGuGuuccgccaggcggcACAGAg -3' miRNA: 3'- ucGGCAGgAGCGGGGCGUCC-C--------------UGUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 124024 | 0.69 | 0.425556 |
Target: 5'- cGUCGUUCUCGUCCgCGCcGGGGucgccGCGGAg -3' miRNA: 3'- uCGGCAGGAGCGGG-GCG-UCCC-----UGUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 125289 | 0.66 | 0.590521 |
Target: 5'- cGCgGUCgUCGCCgCCGUcGGGAggcaaaCAGAu -3' miRNA: 3'- uCGgCAGgAGCGG-GGCGuCCCU------GUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 125590 | 0.66 | 0.600215 |
Target: 5'- cGCCucGUCCacggugaugCGCCCCcCAGGGGCcGAc -3' miRNA: 3'- uCGG--CAGGa--------GCGGGGcGUCCCUGuCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 125727 | 0.66 | 0.620634 |
Target: 5'- cGGCCG-CCUCGCCCuCGUccugccaccaccuuGGGCGGGc -3' miRNA: 3'- -UCGGCaGGAGCGGG-GCGuc------------CCUGUCU- -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 126027 | 0.69 | 0.434038 |
Target: 5'- cGCCGcgCCUCGCCugcgCCGCAGaGACAa- -3' miRNA: 3'- uCGGCa-GGAGCGG----GGCGUCcCUGUcu -5' |
|||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 126098 | 0.7 | 0.400715 |
Target: 5'- cGGCCGgcgCCgUCGCgCUGCGGGGAacuGAg -3' miRNA: 3'- -UCGGCa--GG-AGCGgGGCGUCCCUgu-CU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home