Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24395 | 5' | -62.9 | NC_005264.1 | + | 7071 | 0.7 | 0.400715 |
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Target: 5'- cGGCCGgcgCCgUCGCgCUGCGGGGAacuGAg -3' miRNA: 3'- -UCGGCa--GG-AGCGgGGCGUCCCUgu-CU- -5' |
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| 24395 | 5' | -62.9 | NC_005264.1 | + | 6700 | 0.66 | 0.626477 |
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Target: 5'- cGGCCG-CCUCGCCCuCGUccugcccaccaccuuGGGCGGGc -3' miRNA: 3'- -UCGGCaGGAGCGGG-GCGuc-------------CCUGUCU- -5' |
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| 24395 | 5' | -62.9 | NC_005264.1 | + | 6563 | 0.66 | 0.600215 |
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Target: 5'- cGCCucGUCCacggugaugCGCCCCcCAGGGGCcGAc -3' miRNA: 3'- uCGG--CAGGa--------GCGGGGcGUCCCUGuCU- -5' |
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| 24395 | 5' | -62.9 | NC_005264.1 | + | 6262 | 0.66 | 0.590521 |
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Target: 5'- cGCgGUCgUCGCCgCCGUcGGGAggcaaaCAGAu -3' miRNA: 3'- uCGgCAGgAGCGG-GGCGuCCCU------GUCU- -5' |
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| 24395 | 5' | -62.9 | NC_005264.1 | + | 4997 | 0.69 | 0.425556 |
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Target: 5'- cGUCGUUCUCGUCCgCGCcGGGGucgccGCGGAg -3' miRNA: 3'- uCGGCAGGAGCGGG-GCG-UCCC-----UGUCU- -5' |
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| 24395 | 5' | -62.9 | NC_005264.1 | + | 4819 | 0.66 | 0.616741 |
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Target: 5'- -uCCGUCgUCGCUCUGCAGGuGuuccgccaggcggcACAGAg -3' miRNA: 3'- ucGGCAGgAGCGGGGCGUCC-C--------------UGUCU- -5' |
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| 24395 | 5' | -62.9 | NC_005264.1 | + | 4006 | 0.69 | 0.434038 |
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Target: 5'- uGCC-UCCUCGCCCaC-CAGGGGCu-- -3' miRNA: 3'- uCGGcAGGAGCGGG-GcGUCCCUGucu -5' |
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| 24395 | 5' | -62.9 | NC_005264.1 | + | 994 | 0.67 | 0.541629 |
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Target: 5'- aAGCU---CUUGCCCCGCgcccgugugguggGGGGGCAGGg -3' miRNA: 3'- -UCGGcagGAGCGGGGCG-------------UCCCUGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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