Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24395 | 5' | -62.9 | NC_005264.1 | + | 123845 | 0.66 | 0.616741 |
Target: 5'- -uCCGUCgUCGCUCUGCAGGuGuuccgccaggcggcACAGAg -3' miRNA: 3'- ucGGCAGgAGCGGGGCGUCC-C--------------UGUCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 155301 | 0.68 | 0.514422 |
Target: 5'- aGGCCGUCCUCG-UgCGUAGGcgaggagagGGCGGAc -3' miRNA: 3'- -UCGGCAGGAGCgGgGCGUCC---------CUGUCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 160450 | 0.68 | 0.514422 |
Target: 5'- aGGCCGgcgCCggGCuCCUGCGGGcGACGGc -3' miRNA: 3'- -UCGGCa--GGagCG-GGGCGUCC-CUGUCu -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 21087 | 0.68 | 0.523744 |
Target: 5'- uGCCGUgCUCGCCuCCG-AGGGcCuGAc -3' miRNA: 3'- uCGGCAgGAGCGG-GGCgUCCCuGuCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 994 | 0.67 | 0.541629 |
Target: 5'- aAGCU---CUUGCCCCGCgcccgugugguggGGGGGCAGGg -3' miRNA: 3'- -UCGGcagGAGCGGGGCG-------------UCCCUGUCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 125289 | 0.66 | 0.590521 |
Target: 5'- cGCgGUCgUCGCCgCCGUcGGGAggcaaaCAGAu -3' miRNA: 3'- uCGgCAGgAGCGG-GGCGuCCCU------GUCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 136683 | 0.66 | 0.590521 |
Target: 5'- uGCCGcgaaagUCCUCGCCgCgGCcuGGGACAu- -3' miRNA: 3'- uCGGC------AGGAGCGG-GgCGu-CCCUGUcu -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 125590 | 0.66 | 0.600215 |
Target: 5'- cGCCucGUCCacggugaugCGCCCCcCAGGGGCcGAc -3' miRNA: 3'- uCGG--CAGGa--------GCGGGGcGUCCCUGuCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 126558 | 0.66 | 0.60993 |
Target: 5'- cGCCcucUCCUCGCCUaCGCAcGaGGACGGc -3' miRNA: 3'- uCGGc--AGGAGCGGG-GCGU-C-CCUGUCu -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 24649 | 0.68 | 0.514422 |
Target: 5'- uGGCCG-CCUUGUCuCUGCAGcGaGGCAGGc -3' miRNA: 3'- -UCGGCaGGAGCGG-GGCGUC-C-CUGUCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 71104 | 0.68 | 0.495986 |
Target: 5'- cAGCCGcCCUCgGCCCUGguGa-GCAGAu -3' miRNA: 3'- -UCGGCaGGAG-CGGGGCguCccUGUCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 109495 | 0.68 | 0.493246 |
Target: 5'- cGCCGUCCUuaggcugguugggcUGCCCCugcuggccaaGCAGccccuGGGCAGAc -3' miRNA: 3'- uCGGCAGGA--------------GCGGGG----------CGUC-----CCUGUCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 108146 | 0.71 | 0.353901 |
Target: 5'- -cCUGUCCUCGgCgCCGguGaGGACAGAa -3' miRNA: 3'- ucGGCAGGAGCgG-GGCguC-CCUGUCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 126098 | 0.7 | 0.400715 |
Target: 5'- cGGCCGgcgCCgUCGCgCUGCGGGGAacuGAg -3' miRNA: 3'- -UCGGCa--GG-AGCGgGGCGUCCCUgu-CU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 124024 | 0.69 | 0.425556 |
Target: 5'- cGUCGUUCUCGUCCgCGCcGGGGucgccGCGGAg -3' miRNA: 3'- uCGGCAGGAGCGGG-GCG-UCCC-----UGUCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 123033 | 0.69 | 0.434038 |
Target: 5'- uGCC-UCCUCGCCCaC-CAGGGGCu-- -3' miRNA: 3'- uCGGcAGGAGCGGG-GcGUCCCUGucu -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 108571 | 0.69 | 0.451291 |
Target: 5'- uGGCCaugGUCCUCGCCCCGCucccacucGACAc- -3' miRNA: 3'- -UCGG---CAGGAGCGGGGCGucc-----CUGUcu -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 65373 | 0.69 | 0.460057 |
Target: 5'- cGCCG-CCggguagaGUCUCGCAGGcGACGGAg -3' miRNA: 3'- uCGGCaGGag-----CGGGGCGUCC-CUGUCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 131544 | 0.68 | 0.477855 |
Target: 5'- aGGUCGUCCUCGCugcaucuagCCgGUAGGaGCGGGg -3' miRNA: 3'- -UCGGCAGGAGCG---------GGgCGUCCcUGUCU- -5' |
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24395 | 5' | -62.9 | NC_005264.1 | + | 75697 | 0.68 | 0.490514 |
Target: 5'- cGCCGUCuuucggcgcgaagacUggugCGCCCCGCGGGcGcCGGAg -3' miRNA: 3'- uCGGCAG---------------Ga---GCGGGGCGUCC-CuGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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